Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.4e-82 309.7 174 100.0
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 8.5e-59 230.7 176 76.1
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 3.2e-58 228.8 173 76.9
Potri.007G103000 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.9e-42 176.4 174 60.3
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 8.3e-30 134.4 180 43.3
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.3e-27 127.1 179 50.3
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 6.8e-24 114.8 172 45.3
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 3.1e-21 105.9 171 42.1
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 1.6e-20 103.6 186 34.9
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 1.6e-20 103.6 81 55.6
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 5.9e-20 101.7 190 42.6
THA.LOC104804402 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 7.8e-20 101.3 179 38.0
THA.LOC104804459 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 7.8e-20 101.3 174 39.7
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.3e-19 100.5 175 39.4
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 3.8e-19 99.0 188 38.8
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 6.6e-19 98.2 201 41.8
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 8.6e-19 97.8 180 40.0
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 1.1e-18 97.4 81 50.6
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 1.1e-18 97.4 183 38.8
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 1.5e-18 97.1 174 35.6
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 2.5e-18 96.3 175 38.9
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 2.5e-18 96.3 174 37.4
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 3.3e-18 95.9 172 42.4
AT4G30770 Arabidopsis thaliana HOM05D001418 ORTHO05D003753 7.3e-18 94.7 181 38.1
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 7.3e-18 94.7 174 36.2
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 9.5e-18 94.4 81 53.1
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 9.5e-18 94.4 81 53.1
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 2.1e-17 93.2 72 56.9
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 3.6e-17 92.4 79 53.2
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 3.6e-17 92.4 172 38.4
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 4.7e-17 92.0 197 37.6
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 4.7e-17 92.0 175 36.0
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 4.7e-17 92.0 174 36.2
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 4.7e-17 92.0 172 36.6
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 6.1e-17 91.7 195 42.1
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 6.1e-17 91.7 82 56.1
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 8.0e-17 91.3 174 35.1
Thhalv10027257m.g Eutrema salsugineum HOM05D001418 ORTHO05D003753 8.0e-17 91.3 184 38.6
Gohir.D10G108200 Gossypium hirsutum HOM05D001418 ORTHO05D003753 8.0e-17 91.3 181 34.3
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 8.0e-17 91.3 109 40.4
CARHR238610 Cardamine hirsuta HOM05D001418 ORTHO05D003753 1.0e-16 90.9 181 38.1
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 1.0e-16 90.9 170 40.0
Gorai.011G118700 Gossypium raimondii HOM05D001418 ORTHO05D003753 1.4e-16 90.5 176 35.2
AL7G21370 Arabidopsis lyrata HOM05D001418 ORTHO05D003753 4.0e-16 89.0 178 37.6
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 4.0e-16 89.0 172 36.6
A03p60290 Brassica napus HOM05D001418 ORTHO05D003753 5.2e-16 88.6 183 36.6
Carub.0007s0979 Capsella rubella HOM05D001418 ORTHO05D003753 5.2e-16 88.6 176 40.9
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 5.2e-16 88.6 172 36.6
BcaNung01562 Brassica carinata HOM05D001418 ORTHO05D003753 6.8e-16 88.2 178 36.5
BcaNung02743 Brassica carinata HOM05D001418 ORTHO05D003753 6.8e-16 88.2 178 36.5
C07p58200 Brassica napus HOM05D001418 ORTHO05D003753 6.8e-16 88.2 178 36.5
BraA03t15071Z Brassica rapa HOM05D001418 ORTHO05D003753 6.8e-16 88.2 178 36.5
BolC7t46274H Brassica oleracea HOM05D001418 ORTHO05D002038 8.9e-16 87.8 177 36.2
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 8.9e-16 87.8 172 36.0
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 1.5e-15 87.0 174 35.1
Gohir.A10G157222 Gossypium hirsutum HOM05D001418 ORTHO05D003753 2.6e-15 86.3 181 33.7
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 3.4e-15 85.9 72 55.6
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 3.4e-15 85.9 80 48.8
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 3.4e-15 85.9 80 48.8
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 4.4e-15 85.5 69 53.6
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 5.8e-15 85.1 173 36.4
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 7.5e-15 84.7 174 36.8
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 7.5e-15 84.7 78 48.7
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 1.3e-14 84.0 199 39.2
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.7e-14 83.6 189 39.7
Sp7g28640 Schrenkiella parvula HOM05D001418 ORTHO05D003753 1.7e-14 83.6 174 39.7
BcaNung04827 Brassica carinata HOM05D001418 ORTHO05D003753 2.2e-14 83.2 174 36.8
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 2.2e-14 83.2 198 38.4
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.9e-14 82.8 68 50.0
BcaC09g51866 Brassica carinata HOM05D001418 ORTHO05D003753 3.7e-14 82.4 174 37.4
BolC1t00803H Brassica oleracea HOM05D001418 ORTHO05D003753 3.7e-14 82.4 174 37.4
A01p07400 Brassica napus HOM05D001418 ORTHO05D003753 4.9e-14 82.0 174 37.4
C01p08160 Brassica napus HOM05D001418 ORTHO05D003753 4.9e-14 82.0 174 37.4
BraA01t00689Z Brassica rapa HOM05D001418 ORTHO05D003753 4.9e-14 82.0 174 37.4
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 6.4e-14 81.6 174 34.5
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 6.4e-14 81.6 82 48.8
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 3.2e-13 79.3 192 38.0
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 5.4e-13 78.6 195 37.4
BcaB03g12658 Brassica carinata HOM05D001418 ORTHO05D003753 7.0e-13 78.2 174 35.6
BcaC01g01138 Brassica carinata HOM05D001418 ORTHO05D003753 7.0e-13 78.2 174 35.6
C03p88500 Brassica napus HOM05D001418 ORTHO05D003753 7.0e-13 78.2 174 35.6
BolC3t21160H Brassica oleracea HOM05D001418 ORTHO05D003753 7.0e-13 78.2 174 35.6
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 7.0e-13 78.2 186 36.0
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.2e-12 77.4 166 36.1
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 2.7e-12 76.3 66 50.0
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 2.7e-12 76.3 66 50.0
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 4.6e-12 75.5 65 50.8
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 6.0e-12 75.1 68 45.6
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 6.0e-12 75.1 68 45.6
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 1.0e-11 74.3 169 32.0
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.3e-11 73.9 172 33.1
Gohir.D11G061300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 6.6e-11 71.6 81 44.4
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 1.5e-10 70.5 81 43.2
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.3e-10 69.3 78 44.9
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 9.5e-10 67.8 79 41.8
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 9.5e-10 67.8 65 41.5
A08p19100 Brassica napus HOM05D001418 ORTHO05D003753 1.2e-09 67.4 152 33.6
BraA08t33872Z Brassica rapa HOM05D001418 ORTHO05D003753 1.2e-09 67.4 152 33.6
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.2e-09 67.4 74 44.6
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 4.7e-09 65.5 132 33.3
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 8.0e-09 64.7 61 47.5
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 8.0e-09 64.7 60 50.0
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.8e-08 63.5 206 28.6
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 3.1e-08 62.8 72 43.1
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 4.0e-08 62.4 58 46.6
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 5.2e-08 62.0 65 36.9
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 6.8e-08 61.6 67 43.3
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 8.9e-08 61.2 56 48.2
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 8.9e-08 61.2 53 49.1
VMungo1309G0848 Vigna mungo HOM05D001418 ORTHO05D003753 8.9e-08 61.2 170 31.8
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 2.0e-07 60.1 60 48.3
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.0e-07 60.1 155 32.3
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 2.0e-07 60.1 58 43.1
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 2.6e-07 59.7 60 45.0
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 2.6e-07 59.7 167 31.7
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 3.4e-07 59.3 66 36.4
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 4.4e-07 58.9 64 39.1
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 5.8e-07 58.5 66 36.4
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 5.8e-07 58.5 66 36.4
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 5.8e-07 58.5 205 30.2
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 7.5e-07 58.2 69 39.1
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 7.5e-07 58.2 66 40.9
RcHm_v2.0_Chr2g0122171 Rosa chinensis HOM05D001418 ORTHO05D003753 9.8e-07 57.8 55 41.8
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 1.3e-06 57.4 72 44.4
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 1.3e-06 57.4 165 30.3
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 1.7e-06 57.0 60 46.7
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 1.7e-06 57.0 64 43.8
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 2.2e-06 56.6 168 32.1
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 3.7e-06 55.8 185 27.6
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 4.9e-06 55.5 63 46.0


User provided reference genes

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