Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 2.5e-139 498.8 256 100.0
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 7.1e-139 497.3 256 99.6
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 5.1e-129 464.5 256 93.0
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 7.5e-80 301.2 255 62.0
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 3.7e-79 298.9 252 62.3
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 1.2e-77 293.9 298 54.7
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 1.1e-75 287.3 257 58.4
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 7.3e-75 284.6 262 60.3
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 9.5e-75 284.3 255 61.2
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 8.3e-71 271.2 264 55.3
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 8.3e-71 271.2 256 58.6
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 1.2e-69 267.3 251 58.6
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 3.9e-68 262.3 252 56.3
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 5.1e-68 261.9 250 58.0
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 6.6e-68 261.5 251 58.2
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 1.9e-67 260.0 259 56.4
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 7.3e-67 258.1 267 53.6
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 9.5e-67 257.7 259 54.1
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 4.7e-66 255.4 225 61.3
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 6.2e-66 255.0 249 55.0
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 1.1e-65 254.2 256 56.2
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 1.4e-65 253.8 249 53.8
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 2.3e-65 253.1 249 53.0
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 4.0e-65 252.3 256 55.5
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 4.0e-65 252.3 213 63.4
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 5.2e-65 251.9 257 56.0
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 2.6e-64 249.6 254 54.3
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 1.7e-63 246.9 248 54.8
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 4.9e-63 245.4 252 52.4
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 6.4e-63 245.0 260 54.2
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 8.3e-63 244.6 259 52.9
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 6.0e-61 238.4 265 51.3
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 1.9e-59 233.4 249 50.2
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 4.3e-59 232.3 253 54.2
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 8.1e-58 228.0 256 53.1
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 1.4e-57 227.3 256 51.2
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 1.2e-56 224.2 263 49.0
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 1.1e-54 217.6 256 48.4
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 4.2e-54 215.7 271 50.2
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 7.1e-54 214.9 254 47.2
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 2.1e-53 213.4 250 47.6
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 2.1e-53 213.4 375 38.7
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 3.5e-53 212.6 261 47.9
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 7.8e-53 211.5 261 48.7
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 1.3e-52 210.7 251 46.6
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 2.3e-52 209.9 251 48.2
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 2.3e-52 209.9 262 46.2
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 3.0e-52 209.5 261 48.3
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 1.5e-51 207.2 271 44.6
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 3.6e-50 202.6 253 47.0
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 8.1e-50 201.4 263 43.3
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 1.1e-49 201.1 271 43.5
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 1.8e-49 200.3 240 49.2
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 4.0e-49 199.1 256 44.9
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 5.8e-48 195.3 229 48.5
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 2.2e-47 193.4 253 43.9
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 3.8e-47 192.6 269 44.2
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 3.8e-47 192.6 269 44.2
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 4.9e-47 192.2 171 57.3
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 1.9e-46 190.3 213 50.7
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 5.4e-46 188.7 252 43.7
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 1.2e-45 187.6 252 43.3
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 1.2e-45 187.6 256 44.5
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 6.0e-45 185.3 269 43.1
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 6.0e-45 185.3 249 43.8
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 3.0e-44 183.0 252 43.3
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 3.9e-44 182.6 173 53.8
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 6.6e-44 181.8 252 42.9
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 1.5e-43 180.6 253 43.9
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 5.6e-43 178.7 157 57.3
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 1.3e-42 177.6 232 46.6
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 1.6e-42 177.2 252 41.7
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 3.6e-42 176.0 252 41.3
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 3.6e-42 176.0 252 41.3
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 1.1e-41 174.5 310 39.4
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 1.4e-41 174.1 252 42.1
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 1.3e-39 167.5 263 39.5
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 2.9e-39 166.4 207 44.9
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 7.1e-38 161.8 252 40.9
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 6.0e-37 158.7 168 56.0
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 1.1e-35 154.5 267 37.8
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 5.6e-35 152.1 245 39.2
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 1.3e-34 151.0 270 36.3
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 3.7e-34 149.4 238 39.5
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 4.8e-34 149.1 185 48.1
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 6.2e-34 148.7 157 49.7
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 2.9e-31 139.8 203 38.9
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 8.4e-31 138.3 245 38.8
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 5.5e-30 135.6 167 46.7
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 4.6e-29 132.5 251 37.5
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 1.3e-28 131.0 201 39.8
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.8e-28 130.6 270 33.0
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 1.8e-28 130.6 106 58.5
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 2.5e-27 126.7 114 57.0
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 2.5e-27 126.7 104 55.8
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 6.9e-25 118.6 234 33.8
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 2.6e-24 116.7 188 37.2
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 2.6e-24 116.7 217 35.0
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 4.5e-24 115.9 151 49.0
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 1.4e-22 110.9 279 30.1
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 5.5e-22 109.0 151 46.4
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 2.5e-19 100.1 269 29.4
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 3.3e-19 99.8 96 51.0
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.2e-16 91.3 257 30.0
GSVIVG01022344001 Vitis vinifera HOM05D007225 ORTHO05D009062 5.9e-16 89.0 104 54.8
arahy.Tifrunner.gnm1.ann1.LBHD5T Arachis hypogaea HOM05D007225 ORTHO05D009062 2.8e-10 70.1 147 34.0
SEGI_25786 Sequoiadendron giganteum HOM05D021798 ORTHO05D009062 5.3e-09 65.9 155 26.5
SHI11459 Sapria himalayana HOM05D038817 ORTHO05D009062 1.2e-08 64.7 60 56.7
CBR_g23098 Chara braunii HOM05D007225 ORTHO05D009062 2.9e-07 60.1 236 23.3
Zm00001eb434540 Zea mays HOM05D007225 ORTHO05D009062 9.4e-06 55.1 110 32.7


User provided reference genes

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