Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 5.0e-107 391.3 231 100.0
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 7.8e-76 287.7 231 67.1
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 7.3e-74 281.2 231 68.0
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 2.1e-73 279.6 236 66.1
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 3.4e-71 272.3 231 64.9
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 4.4e-71 271.9 232 66.4
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 5.8e-71 271.6 237 65.4
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 9.8e-71 270.8 233 66.1
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 1.3e-70 270.4 237 67.5
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 2.9e-70 269.2 184 75.5
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 2.9e-70 269.2 232 65.1
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 3.7e-70 268.9 184 75.0
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 3.7e-70 268.9 195 72.3
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 8.3e-70 267.7 238 67.2
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 8.3e-70 267.7 231 64.5
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 1.1e-69 267.3 232 64.2
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.1e-69 267.3 232 64.7
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 1.1e-69 267.3 184 77.7
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 1.4e-69 266.9 229 71.2
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 2.4e-69 266.2 240 62.9
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 2.4e-69 266.2 231 65.8
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 2.7e-68 262.7 175 76.0
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 3.5e-68 262.3 232 62.1
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 3.5e-68 262.3 235 65.5
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 4.6e-68 261.9 183 74.3
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 1.0e-67 260.8 228 63.6
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 3.0e-67 259.2 237 66.2
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 3.9e-67 258.8 250 60.0
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 3.9e-67 258.8 236 61.4
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 3.9e-67 258.8 240 60.0
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 1.1e-66 257.3 244 60.7
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 7.3e-66 254.6 184 73.4
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 7.3e-66 254.6 156 80.8
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 9.5e-66 254.2 226 61.5
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.2e-65 253.8 220 62.3
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 2.1e-65 253.1 159 77.4
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 4.7e-65 251.9 234 61.1
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 4.7e-65 251.9 231 61.5
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 4.7e-65 251.9 158 79.7
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 6.2e-65 251.5 174 74.1
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 8.0e-65 251.1 234 61.1
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 1.1e-64 250.8 157 78.3
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 1.1e-64 250.8 155 79.4
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 1.4e-64 250.4 159 76.1
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 1.8e-64 250.0 184 71.7
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 1.8e-64 250.0 184 71.7
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 3.1e-64 249.2 163 77.3
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 4.0e-64 248.8 230 61.7
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 4.0e-64 248.8 224 62.1
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 4.0e-64 248.8 247 58.3
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 6.8e-64 248.1 283 52.3
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 1.5e-63 246.9 160 76.9
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 2.9e-62 242.7 239 59.0
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 4.9e-62 241.9 164 73.8
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 1.1e-61 240.7 159 73.6
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 1.0e-59 234.2 158 74.1
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 1.7e-59 233.4 158 74.1
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 1.7e-59 233.4 151 76.8
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 9.5e-58 227.6 160 74.4
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 1.4e-56 223.8 156 71.2
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 1.9e-53 213.4 158 67.1
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 3.9e-51 205.7 155 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 2.8e-49 199.5 155 63.9
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 5.4e-45 185.3 96 94.8
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 1.1e-42 177.6 152 58.6
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 2.7e-36 156.4 247 43.7
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 6.4e-30 135.2 108 64.8
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 8.4e-30 134.8 125 64.8
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.9e-26 123.6 141 51.1
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.3e-26 122.5 142 49.3
Potri.007G105401 Populus trichocarpa HOM05D007927 ORTHO05D010029 3.8e-22 109.4 106 64.2
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 9.3e-21 104.8 135 38.5
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 1.7e-14 84.0 48 83.3
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 2.2e-14 83.6 48 81.2
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 2.9e-14 83.2 46 84.8
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.8e-14 82.8 80 61.2
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 8.4e-14 81.6 58 70.7
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 8.4e-14 81.6 46 82.6
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 7.1e-13 78.6 46 80.4
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.8e-11 73.9 46 78.3
Mapoly0178s0020 Marchantia polymorpha HOM05D019817 ORTHO05D016515 4.5e-07 59.3 92 35.9
Pp3c2_6800 Physcomitrium patens HOM05D019817 ORTHO05D016515 7.7e-07 58.5 93 33.3
SEGI_14611 Sequoiadendron giganteum HOM05D019817 ORTHO05D016515 2.2e-06 57.0 94 33.0


User provided reference genes

Program Settings