Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.5e-89 331.6 173 100.0
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.1e-85 318.5 173 94.8
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 4.0e-85 318.2 173 94.8
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 2.4e-74 282.3 173 83.8
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 3.2e-74 282.0 174 85.1
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 4.2e-74 281.6 176 84.1
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 7.1e-74 280.8 175 85.1
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 9.3e-74 280.4 175 85.1
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 1.2e-73 280.0 176 83.5
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 1.2e-73 280.0 174 86.2
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.3e-72 276.6 176 83.5
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.3e-72 275.8 176 83.0
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 8.7e-72 273.9 182 81.9
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.5e-71 272.3 177 80.8
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 3.3e-71 271.9 175 82.9
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 4.3e-71 271.6 175 81.7
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 4.3e-71 271.6 173 82.1
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 7.3e-71 270.8 175 82.9
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 1.3e-70 270.0 175 80.6
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.8e-70 268.9 175 80.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.8e-70 268.1 176 82.4
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 4.8e-70 268.1 176 81.2
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 6.2e-70 267.7 175 80.0
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.1e-69 266.9 173 79.8
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 3.1e-69 265.4 174 79.9
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 6.9e-69 264.2 173 80.3
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.2e-68 263.5 178 78.1
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.2e-68 263.5 176 81.2
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.5e-68 263.1 174 79.9
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.0e-68 262.7 176 79.5
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 4.5e-68 261.5 175 77.7
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 5.8e-68 261.2 174 79.9
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 7.6e-68 260.8 174 78.2
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 9.9e-68 260.4 175 79.4
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.7e-67 259.6 175 80.0
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 6.4e-67 257.7 175 77.7
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 5.4e-66 254.6 173 75.1
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 9.3e-66 253.8 174 77.0
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 1.2e-65 253.4 176 77.3
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 4.6e-65 251.5 177 79.1
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 4.6e-65 251.5 173 76.3
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 4.6e-65 251.5 173 76.3
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 1.0e-64 250.4 176 78.4
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 2.3e-64 249.2 176 76.1
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 5.1e-64 248.1 179 79.3
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 5.1e-64 248.1 173 75.7
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 5.1e-64 248.1 173 75.1
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 8.7e-64 247.3 174 77.0
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.5e-63 246.5 174 74.1
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.5e-63 246.5 174 73.6
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 1.9e-63 246.1 179 78.2
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.9e-63 246.1 176 74.4
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.5e-63 245.7 177 74.6
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.5e-63 245.7 177 74.6
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 3.3e-63 245.4 174 75.9
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 9.6e-63 243.8 176 74.4
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 2.1e-62 242.7 176 73.9
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 2.1e-62 242.7 176 73.9
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 3.7e-62 241.9 177 72.9
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 3.7e-62 241.9 174 71.8
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 3.7e-62 241.9 173 75.7
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 6.2e-62 241.1 177 72.3
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 6.2e-62 241.1 173 74.6
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 6.2e-62 241.1 174 73.6
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 6.2e-62 241.1 173 74.6
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 8.1e-62 240.7 176 73.3
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 1.8e-61 239.6 177 71.8
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 2.4e-61 239.2 176 73.3
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.4e-61 239.2 176 72.7
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 3.1e-61 238.8 174 73.6
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 5.3e-61 238.0 174 72.4
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 6.9e-61 237.7 179 73.2
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 2.0e-60 236.1 177 71.8
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 3.4e-60 235.3 176 75.6
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 3.4e-60 235.3 176 73.9
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 7.6e-60 234.2 149 81.2
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.3e-59 233.4 176 72.2
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.3e-59 233.4 177 74.6
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 2.2e-59 232.6 174 73.0
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 2.2e-59 232.6 178 71.9
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 2.9e-59 232.3 174 70.7
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 2.9e-59 232.3 173 75.1
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 4.9e-59 231.5 175 70.9
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 1.9e-58 229.6 175 72.6
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 2.5e-58 229.2 187 70.1
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 3.2e-58 228.8 176 70.5
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 3.2e-58 228.8 176 70.5
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 3.2e-58 228.8 173 74.6
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.2e-58 228.4 174 73.0
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 5.5e-58 228.0 176 70.5
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.2e-57 226.9 173 71.1
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 2.1e-57 226.1 173 72.3
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 2.7e-57 225.7 180 69.4
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 6.0e-57 224.6 176 69.3
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 7.9e-57 224.2 174 69.5
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.3e-56 222.6 179 69.3
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 8.7e-56 220.7 178 70.2
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 8.7e-56 220.7 178 70.2
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 4.3e-55 218.4 173 68.2
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 9.6e-55 217.2 173 67.6
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.3e-54 216.9 176 69.3
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 2.1e-54 216.1 180 67.8
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 1.8e-53 213.0 145 82.1
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 1.8e-53 213.0 178 68.0
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 4.1e-53 211.8 171 67.8
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 6.9e-53 211.1 178 69.1
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 2.6e-52 209.1 174 64.9
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 3.4e-52 208.8 179 67.0
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 5.8e-52 208.0 173 63.6
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 7.6e-52 207.6 179 67.6
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 3.8e-51 205.3 145 80.7
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 3.8e-51 205.3 175 67.4
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.1e-50 203.8 173 62.4
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.2e-49 200.3 176 66.5
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.2e-49 200.3 176 66.5
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 2.3e-48 196.1 129 78.3
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.9e-47 193.0 173 60.1
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 4.3e-47 191.8 149 74.5
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.5e-44 183.3 137 70.1
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 2.6e-44 182.6 152 64.5
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-42 177.2 146 69.2
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 3.2e-42 175.6 159 61.6
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 7.2e-42 174.5 128 78.9
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.2e-41 173.7 146 68.5
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 7.4e-39 164.5 166 56.0
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 1.1e-37 160.6 144 65.3
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 1.6e-33 146.7 82 80.5
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 7.9e-33 144.4 120 64.2
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-30 136.3 74 87.8
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 6.3e-30 134.8 74 86.5
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 6.3e-30 134.8 72 88.9
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 2.4e-29 132.9 74 85.1
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.7e-27 126.7 173 50.3
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 9.4e-26 120.9 102 66.7
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 8.0e-25 117.9 119 56.3
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 2.3e-24 116.3 105 57.1
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 4.8e-22 108.6 92 64.1
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 4.1e-21 105.5 74 70.3
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 1.1e-18 97.4 119 56.3
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.1e-18 97.4 110 58.2
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.6e-17 93.6 111 59.5
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 8.0e-17 91.3 144 43.1
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 1.0e-16 90.9 94 55.3
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 1.0e-16 90.9 79 59.5
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 7.5e-15 84.7 104 54.8
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 4.7e-09 65.5 30 93.3


User provided reference genes

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