Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 4.4e-75 285.4 266 100.0
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.4e-52 210.7 268 69.8
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.3e-42 177.6 266 66.9
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 1.0e-34 151.4 124 75.8
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.1e-32 143.7 264 60.2
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 1.4e-31 141.0 125 60.0
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 2.4e-28 130.2 170 58.2
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 2.6e-27 126.7 123 57.7
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 2.9e-26 123.2 127 52.0
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 8.5e-26 121.7 122 54.1
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 2.5e-25 120.2 125 48.8
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.6e-24 116.3 104 59.6
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 6.1e-24 115.5 127 55.9
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 6.1e-24 115.5 125 47.2
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 1.0e-23 114.8 125 52.8
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 8.8e-23 111.7 118 57.6
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 4.4e-22 109.4 134 55.2
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 4.8e-21 105.9 130 50.8
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.3e-21 105.5 118 51.7
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 1.8e-20 104.0 84 59.5
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 5.3e-20 102.4 104 52.9
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.2e-19 101.3 115 49.6
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.2e-19 101.3 115 49.6
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.5e-19 100.9 129 44.2
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.5e-19 100.9 100 49.0
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.5e-19 99.4 107 53.3
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 5.9e-19 99.0 107 52.3
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 7.7e-19 98.6 119 45.4
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.0e-18 98.2 140 42.9
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.0e-18 98.2 119 45.4
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.0e-18 98.2 114 57.0
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.9e-18 96.7 76 63.2
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 3.8e-18 96.3 73 58.9
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 3.8e-18 96.3 128 44.5
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 6.5e-18 95.5 132 43.9
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 8.5e-18 95.1 130 49.2
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 8.5e-18 95.1 101 56.4
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 1.1e-17 94.7 119 47.1
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 1.1e-17 94.7 84 50.0
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.1e-17 94.7 84 50.0
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 1.4e-17 94.4 86 55.8
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.4e-17 94.4 127 47.2
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.9e-17 94.0 84 50.0
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 7.2e-17 92.0 81 51.9
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 9.4e-17 91.7 84 52.4
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 9.4e-17 91.7 98 45.9
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.6e-16 90.9 84 57.1
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 1.6e-16 90.9 129 44.2
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.1e-16 90.5 120 41.7
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.7e-16 90.1 82 50.0
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 2.7e-16 90.1 107 44.9
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 4.7e-16 89.4 123 40.7
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 6.1e-16 89.0 98 50.0
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 6.1e-16 89.0 86 48.8
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 8.0e-16 88.6 91 47.3
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.3e-15 87.0 91 46.2
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 2.3e-15 87.0 82 52.4
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 3.0e-15 86.7 89 47.2
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 3.0e-15 86.7 89 47.2
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 3.9e-15 86.3 91 45.1
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 5.2e-15 85.9 93 47.3
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 5.2e-15 85.9 109 47.7
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.2e-15 85.9 128 50.8
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 5.2e-15 85.9 75 60.0
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 6.7e-15 85.5 107 45.8
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 8.8e-15 85.1 141 36.2
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 2.0e-14 84.0 85 49.4
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 2.6e-14 83.6 86 53.5
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 2.6e-14 83.6 83 49.4
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.3e-14 83.2 127 48.0
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 5.7e-14 82.4 125 40.8
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 5.7e-14 82.4 82 50.0
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 7.4e-14 82.0 91 44.0
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 7.4e-14 82.0 103 46.6
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 9.7e-14 81.6 91 44.0
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.3e-13 81.3 89 43.8
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.8e-13 80.1 121 38.8
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 3.7e-13 79.7 73 54.8
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 4.8e-13 79.3 108 38.9
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 4.8e-13 79.3 116 43.1
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 6.3e-13 79.0 74 51.4
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.4e-12 77.8 116 43.1
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.8e-12 77.4 111 39.6
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 3.1e-12 76.6 81 46.9
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 3.1e-12 76.6 72 66.7
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 4.1e-12 76.3 129 36.4
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 5.3e-12 75.9 91 44.0
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 1.2e-11 74.7 85 47.1
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.2e-11 74.7 108 33.3
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.6e-11 74.3 110 40.9
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.6e-11 74.3 103 48.5
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.0e-11 73.9 81 46.9
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 2.6e-11 73.6 87 46.0
C07p00500 Brassica napus HOM05D003899 ORTHO05D003655 3.5e-11 73.2 83 47.0
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 3.5e-11 73.2 109 40.4
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.5e-11 73.2 110 38.2
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 3.5e-11 73.2 80 46.2
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.5e-11 73.2 102 44.1
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 3.5e-11 73.2 85 45.9
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 4.5e-11 72.8 83 47.0
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 4.5e-11 72.8 108 40.7
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 5.9e-11 72.4 72 51.4
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 5.9e-11 72.4 84 44.0
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 5.9e-11 72.4 109 40.4
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 7.7e-11 72.0 91 40.7
BcaC06g36741 Brassica carinata HOM05D003899 ORTHO05D003655 1.3e-10 71.2 83 45.8
BolC7t40496H Brassica oleracea HOM05D003899 ORTHO05D003655 1.3e-10 71.2 83 45.8
BraA07t27814Z Brassica rapa HOM05D003899 ORTHO05D003655 2.2e-10 70.5 81 45.7
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 3.8e-10 69.7 73 52.1
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.8e-10 69.7 91 40.7
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 5.0e-10 69.3 110 39.1
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 6.5e-10 68.9 84 39.3
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 1.5e-09 67.8 110 40.0
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.9e-09 67.4 98 39.8
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.2e-09 66.6 83 42.2
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 3.2e-09 66.6 55 50.9
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.2e-09 66.6 84 44.0
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 4.2e-09 66.2 91 40.7
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 5.5e-09 65.9 72 48.6
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 5.5e-09 65.9 83 41.0
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 5.5e-09 65.9 93 40.9
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 5.5e-09 65.9 89 44.9
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 7.2e-09 65.5 86 41.9
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 9.4e-09 65.1 71 43.7
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 1.2e-08 64.7 91 42.9
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.6e-08 64.3 81 44.4
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.6e-08 64.3 127 34.6
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 2.1e-08 63.9 74 43.2
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 6.1e-08 62.4 84 38.1
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 1.0e-07 61.6 78 39.7
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 1.0e-07 61.6 53 47.2
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 2.3e-07 60.5 82 39.0
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 3.0e-07 60.1 90 40.0
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 3.0e-07 60.1 91 40.7
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 6.7e-07 58.9 86 44.2
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 6.7e-07 58.9 90 37.8
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 6.7e-07 58.9 88 38.6
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 8.8e-07 58.5 77 39.0
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 1.5e-06 57.8 89 40.4
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 2.0e-06 57.4 84 36.9
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 2.0e-06 57.4 127 37.8
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 3.3e-06 56.6 96 35.4
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 3.3e-06 56.6 99 35.4
Actinidia15159 Actinidia chinensis HOM05D000043 ORTHO05D002577 5.7e-06 55.8 68 48.5
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 5.7e-06 55.8 82 35.4
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 9.7e-06 55.1 112 31.2
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 9.7e-06 55.1 105 34.3


User provided reference genes

Program Settings