Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.5e-192 675.2 333 100.0
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.5e-184 648.7 333 96.1
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.7e-178 628.6 333 93.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 3.4e-157 558.5 336 81.8
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 5.6e-152 541.2 333 81.7
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.1e-151 539.3 336 79.8
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.8e-151 538.9 343 77.6
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.1e-150 537.0 344 77.0
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.4e-150 535.8 345 76.8
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 3.1e-150 535.4 336 78.9
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 9.0e-150 533.9 333 81.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.0e-149 532.7 327 79.5
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 7.6e-149 530.8 336 77.7
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.2e-148 529.3 333 80.5
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.9e-148 528.9 327 78.3
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.8e-148 528.5 334 78.1
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 6.4e-148 527.7 327 78.9
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.1e-147 526.9 335 78.5
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 5.4e-147 524.6 326 78.8
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 5.4e-147 524.6 337 76.3
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.2e-146 523.5 331 77.9
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 4.6e-146 521.5 323 78.6
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 3.0e-145 518.8 334 76.3
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 5.1e-145 518.1 335 76.1
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.1e-144 516.9 329 76.0
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 3.3e-144 515.4 345 73.9
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 3.3e-144 515.4 325 76.6
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 4.3e-144 515.0 332 75.0
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.3e-144 514.2 326 76.4
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.3e-144 514.2 326 76.4
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 9.6e-144 513.8 331 76.1
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 9.6e-144 513.8 329 78.4
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 9.6e-144 513.8 326 76.1
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 9.6e-144 513.8 321 76.6
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.6e-143 513.1 338 74.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.6e-143 513.1 327 77.1
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.1e-143 512.7 331 75.8
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.1e-143 512.7 331 75.8
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.1e-143 512.7 331 75.8
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 3.6e-143 511.9 326 76.1
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 3.6e-143 511.9 333 76.0
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 3.6e-143 511.9 333 76.0
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.6e-143 511.9 323 76.8
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 4.8e-143 511.5 332 78.0
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 8.1e-143 510.8 328 76.5
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.1e-143 510.8 334 74.6
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 8.1e-143 510.8 338 74.3
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-142 510.4 331 75.8
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-142 510.0 330 75.2
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.4e-142 510.0 330 75.2
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.4e-142 510.0 330 75.2
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.8e-142 509.6 322 76.1
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.8e-142 509.6 331 74.9
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 5.3e-142 508.1 334 74.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 6.9e-142 507.7 323 76.8
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 9.0e-142 507.3 322 76.4
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.5e-141 506.5 326 76.1
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 4.5e-141 505.0 265 89.4
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 7.6e-141 504.2 331 75.5
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.3e-140 503.4 333 73.6
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.3e-140 503.4 263 87.5
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.9e-140 502.3 335 74.6
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 8.4e-140 500.7 321 76.9
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.1e-139 500.4 266 86.8
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.4e-139 500.0 327 75.8
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.4e-139 500.0 330 75.2
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.4e-139 499.2 338 72.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 3.2e-139 498.8 300 80.0
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 4.2e-139 498.4 297 79.8
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 4.2e-139 498.4 331 74.0
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 4.2e-139 498.4 337 73.6
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 4.2e-139 498.4 336 74.1
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 5.4e-139 498.0 322 73.6
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 7.1e-139 497.7 330 74.5
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 9.3e-139 497.3 331 72.5
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 1.2e-138 496.9 331 73.1
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.6e-138 496.5 306 77.1
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 2.7e-138 495.7 296 80.4
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.7e-138 495.7 297 80.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 2.7e-138 495.7 265 85.7
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 3.5e-138 495.4 266 85.7
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 3.5e-138 495.4 326 75.8
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 4.6e-138 495.0 263 86.7
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 4.6e-138 495.0 336 74.7
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 7.9e-138 494.2 265 87.5
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.3e-137 493.4 281 81.5
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 3.0e-137 492.3 343 70.3
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 5.1e-137 491.5 324 75.3
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 5.1e-137 491.5 326 73.3
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 6.7e-137 491.1 323 74.6
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.1e-136 490.3 309 76.4
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.5e-136 490.0 263 85.6
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 4.3e-136 488.4 265 85.3
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 7.4e-136 487.6 265 85.3
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 9.6e-136 487.3 325 72.9
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 9.6e-136 487.3 265 84.9
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.3e-135 486.9 293 79.9
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.6e-135 486.5 263 85.6
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.8e-135 485.7 326 73.3
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.8e-135 485.7 330 73.6
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.7e-135 485.3 326 73.0
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 3.7e-135 485.3 323 75.2
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.8e-135 485.0 293 79.9
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 6.2e-135 484.6 330 73.3
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.0e-134 481.9 266 84.6
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 2.6e-133 479.2 263 84.0
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 4.5e-133 478.4 319 73.7
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.3e-132 476.9 331 72.2
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 2.2e-132 476.1 327 72.8
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 3.2e-131 472.2 321 72.9
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 9.3e-131 470.7 292 77.4
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 9.3e-131 470.7 242 91.3
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 3.0e-129 465.7 267 83.5
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 2.5e-128 462.6 242 88.8
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 6.5e-124 448.0 325 69.5
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.5e-122 442.2 233 88.0
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.0e-121 440.7 247 87.4
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.3e-121 439.5 327 65.1
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 3.3e-120 435.6 263 78.3
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 7.7e-117 424.5 214 90.7
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.7e-116 423.3 217 88.0
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 3.8e-116 422.2 221 87.8
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 2.5e-115 419.5 268 73.1
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 4.2e-115 418.7 270 72.6
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 6.1e-114 414.8 276 73.2
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 2.0e-112 409.8 217 85.7
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 4.3e-112 408.7 228 83.8
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.1e-107 394.0 328 62.8
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.6e-106 390.2 208 87.0
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 7.9e-106 387.9 326 60.4
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 3.0e-105 386.0 267 69.7
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.3e-103 380.6 218 78.9
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 3.0e-97 359.4 291 63.9
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 6.7e-97 358.2 315 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 2.6e-93 346.3 327 56.0
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 4.7e-90 335.5 241 70.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.6e-80 303.1 162 87.7
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 5.7e-80 302.0 270 55.6
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.7e-79 300.4 213 72.8
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 2.2e-79 300.1 152 90.1
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.0e-77 293.5 208 69.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 3.8e-76 289.3 218 68.3
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 4.7e-74 282.3 239 63.6
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 5.7e-72 275.4 213 66.7
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 5.9e-69 265.4 162 75.9
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 3.4e-56 223.0 129 79.1
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 7.3e-51 205.3 147 66.7
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 8.6e-44 181.8 204 52.5
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.3e-23 114.8 115 54.8
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 6.0e-21 105.9 84 61.9
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.1e-19 101.7 110 54.5
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 4.5e-16 89.7 130 43.8
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 2.9e-15 87.0 49 77.6


User provided reference genes

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