Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G046050 Populus trichocarpa HOM05D009709 ORTHO05D003288 4.6e-39 164.1 83 100.0
Gorai.009G378000 Gossypium raimondii HOM05D009709 ORTHO05D003288 4.4e-13 77.8 74 54.1
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 6.3e-12 73.9 80 41.2
RcHm_v2.0_Chr5g0074181 Rosa chinensis HOM05D009709 ORTHO05D003288 1.1e-11 73.2 78 46.2
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 1.4e-11 72.8 65 49.2
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.8e-11 72.4 80 41.2
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 5.4e-11 70.9 76 44.7
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 2.7e-10 68.6 81 42.0
Peaxi162Scf00342g00098 Petunia axillaris HOM05D011051 ORTHO05D003288 1.3e-09 66.2 78 38.5
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 1.7e-09 65.9 66 48.5
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 2.2e-09 65.5 80 40.0
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 2.2e-09 65.5 62 51.6
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 3.8e-09 64.7 60 46.7
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 3.8e-09 64.7 60 46.7
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 5.0e-09 64.3 80 38.8
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 5.0e-09 64.3 69 44.9
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 5.0e-09 64.3 69 43.5
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 5.0e-09 64.3 69 44.9
AUR62000354 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.0e-09 64.3 74 43.2
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 6.5e-09 63.9 73 39.7
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 6.5e-09 63.9 73 43.8
Carub.0002s0787 Capsella rubella HOM05D000162 ORTHO05D003288 6.5e-09 63.9 62 45.2
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 8.5e-09 63.5 69 43.5
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 8.5e-09 63.5 74 40.5
HanXRQChr13g0415191 Helianthus annuus HOM05D022346 ORTHO05D003288 1.1e-08 63.2 72 43.1
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.5e-08 62.8 80 38.8
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 1.9e-08 62.4 70 41.4
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 1.9e-08 62.4 73 42.5
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 1.9e-08 62.4 70 41.4
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.9e-08 62.4 74 40.5
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 3.2e-08 61.6 70 41.4
AUR62006890 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.2e-08 61.6 76 38.2
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 5.5e-08 60.8 80 37.5
AUR62005214 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.5e-08 60.8 80 37.5
Gorai.009G377200 Gossypium raimondii HOM05D012722 ORTHO05D029832 7.2e-08 60.5 58 51.7
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.4e-08 60.1 74 39.2
Nitab4.5_0000956g0130 Nicotiana tabacum HOM05D011051 ORTHO05D003288 9.4e-08 60.1 71 43.7
AUR62000710 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.2e-07 59.7 74 36.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.2e-07 59.7 74 37.8
Nitab4.5_0000428g0460 Nicotiana tabacum HOM05D011051 ORTHO05D003288 1.2e-07 59.7 71 45.1
AUR62005260 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.6e-07 59.3 74 36.5
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 1.6e-07 59.3 75 41.3
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.1e-07 58.9 68 44.1
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.7e-07 58.5 74 39.2
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 2.7e-07 58.5 60 43.3
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 2.7e-07 58.5 60 40.0
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 3.6e-07 58.2 60 40.0
AUR62005284 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.7e-07 57.8 64 42.2
AUR62017647 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.7e-07 57.8 80 36.2
FAN16G3455 Fragaria x ananassa HOM05D009709 ORTHO05D003288 4.7e-07 57.8 67 41.8
FvH4_3g39650 Fragaria vesca HOM05D000162 ORTHO05D003288 6.1e-07 57.4 68 39.7
Manes.09G016680 Manihot esculenta HOM05D000162 ORTHO05D003288 8.0e-07 57.0 61 44.3
RcHm_v2.0_Chr5g0072871 Rosa chinensis HOM05D009709 ORTHO05D003288 8.0e-07 57.0 62 48.4
Lsat_1_v5_gn_3_95641 Lactuca sativa HOM05D000162 ORTHO05D000090 1.0e-06 56.6 63 44.4
AUR62000690 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.4e-06 56.2 80 36.2
Migut.M00051 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.4e-06 56.2 77 39.0
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.4e-06 56.2 54 48.1
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.8e-06 55.8 56 42.9
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 1.8e-06 55.8 72 40.3
RcHm_v2.0_Chr5g0078611 Rosa chinensis HOM05D009709 ORTHO05D003288 1.8e-06 55.8 58 44.8
AUR62000378 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.3e-06 55.5 62 40.3
FAN11G2462 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.3e-06 55.5 80 36.2
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 3.0e-06 55.1 73 32.9
Thhalv10015983m.g Eutrema salsugineum HOM05D000162 ORTHO05D003288 3.0e-06 55.1 71 38.0
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 4.0e-06 54.7 68 38.2
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 4.0e-06 54.7 74 37.8
AUR62000665 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.0e-06 54.7 68 38.2
FAN18G0982 Fragaria x ananassa HOM05D009709 ORTHO05D003288 4.0e-06 54.7 60 38.3
Potri.005G050240 Populus trichocarpa HOM05D000162 ORTHO05D000090 4.0e-06 54.7 29 93.1
arahy.Tifrunner.gnm1.ann1.KQ42YR Arachis hypogaea HOM05D018308 ORTHO05D003288 5.2e-06 54.3 72 43.1
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 5.2e-06 54.3 65 43.1
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 5.2e-06 54.3 71 38.0
A09p13590 Brassica napus HOM05D000162 ORTHO05D003288 6.8e-06 53.9 57 42.1
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 6.8e-06 53.9 65 43.1
Cc07_g18940 Coffea canephora HOM05D000162 ORTHO05D000090 6.8e-06 53.9 73 43.8
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 6.8e-06 53.9 77 37.7
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 6.8e-06 53.9 78 38.5
C01p39860 Brassica napus HOM05D000162 ORTHO05D003288 8.8e-06 53.5 57 43.9
QL03p009030 Quercus lobata HOM05D000162 ORTHO05D000090 8.8e-06 53.5 72 38.9
SalBow3G1670 Salvia bowleyana HOM05D022251 ORTHO05D003288 8.8e-06 53.5 53 45.3


User provided reference genes

Program Settings