Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.2e-95 351.7 171 100.0
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 6.3e-83 310.8 171 88.9
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 3.5e-81 305.1 167 87.4
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 3.0e-77 292.0 163 86.5
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 1.5e-76 289.7 178 81.5
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 1.7e-75 286.2 172 80.8
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.7e-75 286.2 171 81.9
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 2.8e-75 285.4 175 80.6
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 4.9e-75 284.6 172 80.2
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 6.3e-75 284.3 177 79.1
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 6.3e-75 284.3 176 79.0
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.1e-74 283.5 176 80.1
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 1.1e-74 283.5 173 80.3
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 2.4e-74 282.3 177 79.7
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 4.1e-74 281.6 178 80.3
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 4.1e-74 281.6 177 79.1
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 5.4e-74 281.2 172 80.2
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 9.2e-74 280.4 178 79.8
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 9.2e-74 280.4 177 78.5
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.6e-73 279.6 167 83.2
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.6e-73 279.6 175 80.6
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.6e-73 279.6 177 79.1
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 2.0e-73 279.3 178 79.8
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.0e-73 279.3 176 80.1
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 3.5e-73 278.5 176 77.8
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 3.5e-73 278.5 175 80.0
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 4.5e-73 278.1 175 80.0
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 5.9e-73 277.7 176 77.8
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 5.9e-73 277.7 176 77.3
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 7.8e-73 277.3 167 80.8
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 7.8e-73 277.3 177 78.0
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 7.8e-73 277.3 177 78.0
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 7.8e-73 277.3 175 78.9
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 7.8e-73 277.3 175 78.9
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 7.8e-73 277.3 178 78.7
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 1.0e-72 276.9 176 78.4
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.3e-72 276.6 177 79.1
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.3e-72 276.6 174 79.3
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.3e-72 276.6 176 76.7
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.3e-72 276.6 176 76.7
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.3e-72 276.6 176 76.7
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 1.3e-72 276.6 174 78.7
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.3e-72 275.8 173 78.0
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 2.9e-72 275.4 175 78.3
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.9e-72 275.0 174 79.3
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.9e-72 275.0 174 79.3
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 8.6e-72 273.9 175 79.4
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.1e-71 273.5 176 75.6
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.5e-71 273.1 176 76.1
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.5e-71 273.1 176 76.1
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.9e-71 272.7 176 75.6
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 2.5e-71 272.3 177 76.3
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 4.3e-71 271.6 176 76.1
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 5.6e-71 271.2 173 78.0
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 5.6e-71 271.2 177 75.7
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 9.5e-71 270.4 175 78.3
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.2e-70 270.0 181 74.6
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.2e-70 270.0 178 74.2
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.6e-70 269.6 172 76.2
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.6e-70 269.6 179 73.7
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 2.8e-70 268.9 171 77.2
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 2.8e-70 268.9 179 73.2
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.6e-70 268.5 174 77.6
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 6.1e-70 267.7 173 76.3
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 8.0e-70 267.3 178 74.7
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.0e-69 266.9 169 79.3
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.4e-69 266.5 176 74.4
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.4e-69 266.5 177 72.3
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.8e-69 266.2 171 77.2
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.8e-69 266.2 161 81.4
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 3.1e-69 265.4 168 78.6
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 5.2e-69 264.6 168 78.6
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 5.2e-69 264.6 168 78.6
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 5.2e-69 264.6 168 78.6
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 5.2e-69 264.6 173 75.1
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.8e-69 264.2 175 73.7
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 8.9e-69 263.8 175 76.6
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.2e-68 263.5 168 78.0
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.0e-68 262.7 178 73.6
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.0e-68 262.7 175 73.1
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.6e-68 262.3 175 73.1
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 4.4e-68 261.5 170 72.9
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 4.4e-68 261.5 176 72.2
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 4.4e-68 261.5 174 74.1
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 7.5e-68 260.8 167 79.6
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 7.5e-68 260.8 175 72.6
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 7.5e-68 260.8 167 75.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 9.8e-68 260.4 174 73.6
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 1.7e-67 259.6 163 81.0
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.7e-67 259.6 178 74.2
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.9e-67 258.8 166 75.9
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 3.7e-67 258.5 163 80.4
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 6.4e-67 257.7 170 72.9
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 6.4e-67 257.7 176 71.6
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.1e-66 256.9 170 74.7
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.9e-66 256.1 176 73.3
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 2.4e-66 255.8 168 74.4
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 4.1e-66 255.0 164 76.2
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 9.2e-66 253.8 166 73.5
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.2e-65 253.4 226 61.1
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.7e-65 252.3 173 71.7
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 3.5e-65 251.9 166 74.1
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 3.5e-65 251.9 176 69.9
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 3.5e-65 251.9 168 73.8
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 3.5e-65 251.9 176 69.9
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.6e-65 251.5 155 80.6
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 4.6e-65 251.5 176 69.3
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 4.6e-65 251.5 176 71.0
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 6.0e-65 251.1 175 70.9
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.8e-65 250.8 167 74.3
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.0e-64 250.4 176 71.0
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-64 250.0 167 73.7
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.3e-64 250.0 176 68.2
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.0e-64 248.8 167 73.1
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 3.0e-64 248.8 166 73.5
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 3.0e-64 248.8 178 68.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 3.9e-64 248.4 160 75.6
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 8.6e-64 247.3 179 68.7
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.5e-63 246.5 174 68.4
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.9e-63 246.1 156 77.6
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 2.5e-63 245.7 168 71.4
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 9.5e-63 243.8 179 68.2
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.6e-62 243.0 172 68.6
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 4.7e-62 241.5 172 69.2
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 8.0e-62 240.7 169 65.7
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.8e-61 239.6 172 68.0
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 5.2e-61 238.0 157 74.5
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-60 236.9 168 70.2
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.5e-60 236.5 177 63.3
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.6e-60 235.7 165 68.5
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 3.4e-60 235.3 158 74.1
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.7e-59 233.0 174 65.5
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.7e-57 225.7 173 60.7
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.6e-54 216.5 165 63.0
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 2.1e-54 216.1 165 63.0
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 5.4e-50 201.4 133 72.9
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 6.6e-48 194.5 122 82.0
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.3e-47 192.2 125 79.2
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 9.6e-47 190.7 118 79.7
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 8.1e-46 187.6 123 76.4
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 8.1e-46 187.6 123 76.4
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 2.4e-45 186.0 191 48.7
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 5.8e-44 181.4 113 80.5
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.7e-40 169.9 114 76.3
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 9.0e-37 157.5 169 46.7
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.3e-35 153.7 86 80.2
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.1e-34 147.9 104 72.1
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.1e-34 147.9 97 76.3
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.6e-33 145.2 99 74.7
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.4e-26 122.9 95 67.4
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 2.3e-24 116.3 164 41.5
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 1.1e-23 114.0 59 84.7
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 9.6e-23 110.9 103 56.3
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.8e-19 99.0 136 40.4
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 4.2e-18 95.5 172 37.2
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 7.1e-18 94.7 52 82.7
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 9.3e-18 94.4 114 50.9
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 1.8e-16 90.1 52 80.8
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.8e-16 90.1 116 43.1
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.6e-14 83.6 48 79.2
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 6.2e-14 81.6 97 43.3
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.4e-13 80.5 50 76.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.8e-08 63.5 53 62.3
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 2.2e-06 56.6 35 71.4
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 2.8e-06 56.2 59 54.2


User provided reference genes

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