Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 1.4e-134 483.0 263 100.0
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 1.3e-114 416.8 310 71.3
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 6.5e-111 404.4 262 82.1
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 3.0e-108 395.6 259 71.0
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 3.9e-108 395.2 259 79.2
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 5.7e-107 391.3 259 71.0
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 7.4e-107 391.0 259 70.7
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.8e-106 389.0 259 73.4
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 3.7e-106 388.7 259 78.8
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 6.3e-106 387.9 259 71.0
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 1.1e-105 387.1 259 78.8
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 2.4e-105 386.0 259 73.0
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 5.3e-105 384.8 259 68.0
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 1.5e-104 383.3 259 68.0
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 1.5e-104 383.3 259 69.9
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 5.9e-104 381.3 259 67.2
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 5.9e-104 381.3 259 77.2
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 1.0e-103 380.6 259 69.5
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 1.3e-103 380.2 259 66.8
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 2.2e-103 379.4 259 69.1
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 2.9e-103 379.0 261 67.0
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 3.8e-103 378.6 257 77.0
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 1.9e-102 376.3 259 71.4
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 1.9e-102 376.3 259 71.4
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 2.5e-102 375.9 259 66.4
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 2.5e-102 375.9 259 67.6
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 3.2e-102 375.6 259 71.4
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 5.5e-102 374.8 257 67.7
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 5.5e-102 374.8 259 75.7
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 1.6e-101 373.2 259 75.7
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.7e-101 372.5 259 74.9
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 4.6e-101 371.7 259 76.8
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.8e-100 369.8 259 76.1
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 2.3e-100 369.4 259 73.0
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 2.3e-100 369.4 259 64.9
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 3.0e-100 369.0 259 74.5
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 8.8e-100 367.5 259 65.3
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.1e-99 367.1 259 73.0
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.5e-99 366.7 259 74.5
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.5e-99 366.7 259 65.3
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 1.5e-99 366.7 259 65.3
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 2.6e-99 365.9 259 67.2
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 4.4e-99 365.2 259 69.1
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 9.7e-99 364.0 259 66.8
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 9.7e-99 364.0 255 74.9
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 9.7e-99 364.0 259 64.9
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 9.7e-99 364.0 259 66.4
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 9.7e-99 364.0 259 66.0
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 1.3e-98 363.6 259 64.5
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 1.7e-98 363.2 255 74.5
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 2.2e-98 362.8 259 70.7
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 2.2e-98 362.8 259 64.1
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 4.8e-98 361.7 271 73.1
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 8.2e-98 360.9 259 66.4
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 1.1e-97 360.5 262 64.9
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 1.1e-97 360.5 259 68.0
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 1.8e-97 359.8 261 65.1
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 2.4e-97 359.4 257 67.3
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 3.1e-97 359.0 254 74.4
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 3.1e-97 359.0 261 64.8
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 4.1e-97 358.6 259 63.7
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 4.1e-97 358.6 259 64.9
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 5.3e-97 358.2 257 66.9
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 6.9e-97 357.8 254 74.4
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 6.9e-97 357.8 257 63.8
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 1.2e-96 357.1 257 66.9
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 1.5e-96 356.7 336 54.5
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 2.0e-96 356.3 259 64.1
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 2.6e-96 355.9 259 63.7
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 5.9e-96 354.8 259 64.5
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 5.9e-96 354.8 259 64.5
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 7.7e-96 354.4 259 64.1
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 1.0e-95 354.0 259 64.1
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 1.0e-95 354.0 259 64.1
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 1.0e-95 354.0 259 64.1
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.0e-95 354.0 257 71.6
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 1.0e-95 354.0 260 67.3
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 2.2e-95 352.8 259 63.3
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 8.5e-95 350.9 259 63.3
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 2.5e-94 349.4 259 72.2
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 4.2e-94 348.6 259 62.2
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 4.2e-94 348.6 259 65.6
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 5.5e-94 348.2 258 62.8
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.6e-93 346.7 259 63.7
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 4.7e-93 345.1 259 61.0
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 9.7e-91 337.4 259 70.3
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.7e-90 335.5 259 61.8
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 3.7e-90 335.5 259 60.2
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 1.1e-89 334.0 259 61.8
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 5.3e-89 331.6 257 61.5
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 2.0e-88 329.7 259 59.5
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 1.7e-87 326.6 259 60.6
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 8.5e-87 324.3 244 62.7
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 8.5e-87 324.3 254 61.8
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 1.7e-82 310.1 207 83.6
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.2e-82 309.7 259 58.7
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 4.5e-80 302.0 207 80.7
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 2.9e-79 299.3 213 76.1
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 1.8e-73 280.0 259 60.6
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 3.1e-73 279.3 259 52.5
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 2.7e-72 276.2 209 61.7
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 3.5e-72 275.8 192 67.2
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 5.5e-70 268.5 175 69.7
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 2.8e-69 266.2 213 61.0
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 2.6e-67 259.6 259 49.8
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 4.4e-59 232.3 172 77.9
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 9.8e-59 231.1 172 77.3
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 4.9e-58 228.8 177 75.7
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 3.3e-54 216.1 261 45.6
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 3.1e-52 209.5 212 53.8
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 5.2e-52 208.8 178 56.7
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 3.2e-49 199.5 148 63.5
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 5.4e-49 198.7 206 44.7
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 1.6e-48 197.2 257 43.2
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 2.9e-42 176.4 221 48.0
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 5.6e-38 162.2 123 80.5
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 2.1e-37 160.2 94 79.8
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 4.4e-35 152.5 179 54.7
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 9.6e-30 134.8 229 37.6
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 2.6e-27 126.7 89 75.3
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 8.4e-26 121.7 148 48.0
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 6.0e-24 115.5 81 59.3
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.7e-23 114.0 81 58.0
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 7.3e-22 108.6 211 30.8
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 9.6e-22 108.2 78 62.8
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 9.6e-22 108.2 78 62.8
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 1.3e-21 107.8 78 62.8
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 5.3e-20 102.4 59 81.4
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 6.7e-15 85.5 57 61.4
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 1.3e-10 71.2 55 61.8
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 9.3e-09 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 3.3e-06 56.6 42 54.8
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 3.3e-06 56.6 42 54.8
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 3.3e-06 56.6 42 52.4
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 7.4e-06 55.5 41 53.7


User provided reference genes

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