Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.1e-96 356.7 180 100.0
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 4.0e-88 328.2 176 91.5
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.2e-86 322.4 180 89.4
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 6.2e-81 304.3 207 77.3
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 3.8e-78 295.0 179 83.8
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 6.5e-78 294.3 180 82.8
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.4e-77 293.1 179 82.7
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.9e-77 292.7 179 83.2
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.9e-77 292.7 180 82.2
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 2.5e-77 292.4 180 83.3
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 5.5e-77 291.2 180 81.1
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 3.5e-76 288.5 171 84.8
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 6.0e-76 287.7 180 80.6
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 7.9e-76 287.3 180 80.6
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.8e-75 286.2 179 81.0
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.7e-75 284.3 180 79.4
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.1e-74 283.5 181 79.6
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.1e-74 283.5 180 79.4
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 1.5e-74 283.1 174 82.8
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.5e-74 283.1 180 79.4
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.5e-74 283.1 180 78.9
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.5e-74 283.1 180 78.9
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 2.5e-74 282.3 180 78.3
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 2.5e-74 282.3 169 84.0
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 7.4e-74 280.8 180 80.6
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 9.6e-74 280.4 179 78.2
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 9.6e-74 280.4 179 79.3
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.3e-73 280.0 180 78.9
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.6e-73 279.6 179 78.8
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.6e-73 279.6 180 80.0
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 2.1e-73 279.3 180 78.3
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.7e-73 278.5 179 78.8
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 4.8e-73 278.1 180 75.0
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 6.3e-73 277.7 178 77.5
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 6.3e-73 277.7 180 78.3
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 6.3e-73 277.7 178 78.7
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 8.2e-73 277.3 176 80.1
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.1e-72 276.9 169 81.1
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.1e-72 276.9 176 80.1
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.1e-72 276.9 175 80.6
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.4e-72 275.8 169 81.1
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 2.4e-72 275.8 180 77.8
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 4.1e-72 275.0 168 80.4
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 4.1e-72 275.0 180 77.8
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.3e-72 274.6 180 77.8
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 9.0e-72 273.9 180 76.1
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 9.0e-72 273.9 180 77.8
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.0e-72 273.9 180 77.2
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.5e-71 273.1 180 77.8
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.5e-71 273.1 180 77.8
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 76.5
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.0e-71 272.7 180 76.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.4e-71 271.9 178 76.4
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.4e-71 271.9 180 76.7
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 4.5e-71 271.6 180 75.6
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 5.9e-71 271.2 180 76.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 7.6e-71 270.8 180 76.7
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-70 270.4 180 76.1
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.3e-70 270.0 180 76.7
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.3e-70 270.0 180 76.1
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.3e-70 270.0 180 76.1
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.3e-70 270.0 180 75.6
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.7e-70 269.6 180 75.0
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.2e-70 269.2 180 76.1
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.2e-70 269.2 180 76.7
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 3.8e-70 268.5 180 75.6
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 3.8e-70 268.5 176 76.7
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 5.0e-70 268.1 172 78.5
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 6.5e-70 267.7 180 73.9
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.5e-70 267.3 174 76.4
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.5e-70 267.3 172 77.3
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 8.5e-70 267.3 179 73.7
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 1.4e-69 266.5 178 74.7
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.4e-69 266.5 180 75.6
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.9e-69 266.2 180 76.1
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 2.5e-69 265.8 179 74.9
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 3.2e-69 265.4 168 79.2
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 74.3
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 4.2e-69 265.0 180 77.8
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 5.5e-69 264.6 183 74.9
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.2e-69 264.2 172 77.3
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 7.2e-69 264.2 171 76.0
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.2e-69 264.2 180 75.0
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.2e-68 263.5 178 75.3
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 2.1e-68 262.7 172 77.9
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 2.7e-68 262.3 180 73.9
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.7e-68 262.3 180 74.4
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 4.6e-68 261.5 178 74.2
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.1e-68 261.2 221 63.3
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.0e-67 260.4 169 74.6
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.3e-67 260.0 178 73.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.3e-67 260.0 177 72.3
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.3e-67 259.2 180 72.2
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.3e-67 259.2 169 74.6
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 3.9e-67 258.5 177 71.2
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 3.9e-67 258.5 177 71.8
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 5.1e-67 258.1 177 71.8
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 5.1e-67 258.1 177 71.8
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 5.1e-67 258.1 180 71.7
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 8.7e-67 257.3 180 71.7
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 8.7e-67 257.3 177 70.6
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.9e-66 256.1 169 74.6
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 2.5e-66 255.8 177 70.6
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 3.3e-66 255.4 180 71.1
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 4.3e-66 255.0 180 73.3
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 4.3e-66 255.0 175 71.4
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 4.3e-66 255.0 171 74.3
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 2.2e-65 252.7 168 75.0
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 4.8e-65 251.5 180 70.6
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 6.3e-65 251.1 175 70.9
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 6.3e-65 251.1 169 74.6
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.4e-64 250.0 169 75.1
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.8e-64 249.6 160 77.5
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.2e-63 246.9 169 72.8
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.0e-63 246.1 177 68.9
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 8.5e-62 240.7 158 77.2
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 8.5e-62 240.7 175 70.9
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.4e-61 240.0 180 70.6
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.4e-61 240.0 172 70.3
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.5e-61 239.2 171 71.3
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 2.1e-60 236.1 150 79.3
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 6.1e-60 234.6 150 78.7
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 6.1e-60 234.6 201 63.2
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 2.3e-59 232.6 175 65.1
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 8.8e-59 230.7 147 78.9
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 3.3e-58 228.8 170 70.0
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 4.1e-56 221.9 180 66.1
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 2.2e-49 199.5 120 84.2
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.1e-48 195.3 162 58.0
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.3e-48 194.9 170 63.5
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.2e-47 193.7 129 77.5
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 2.6e-47 192.6 165 57.6
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 3.5e-47 192.2 173 61.8
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 5.0e-46 188.3 162 56.2
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 7.2e-45 184.5 115 79.1
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 9.4e-45 184.1 167 52.7
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 9.4e-45 184.1 118 80.5
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 4.7e-44 181.8 165 55.8
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.5e-39 165.2 164 56.7
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 7.2e-37 157.9 192 52.1
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 1.4e-35 153.7 171 49.7
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 4.0e-35 152.1 161 51.6
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 2.6e-34 149.4 86 84.9
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 7.5e-34 147.9 222 41.0
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.1e-32 144.1 139 55.4
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.4e-32 143.7 106 68.9
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.8e-32 143.3 83 83.1
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 2.4e-32 142.9 165 46.7
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.0e-30 137.5 98 72.4
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.0e-30 137.5 83 78.3
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.4e-27 127.1 94 66.0
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 4.0e-27 125.6 117 60.7
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.5e-26 123.6 87 69.0
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.4e-26 122.1 94 67.0
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 4.9e-25 118.6 98 64.3
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 1.0e-22 110.9 75 74.7
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 2.3e-22 109.8 85 63.5
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.0e-19 100.9 137 46.7
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.7e-14 83.6 55 69.1
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 1.6e-12 77.0 218 31.7
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.8e-11 73.6 61 59.0
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 7.5e-10 68.2 85 48.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 6.4e-09 65.1 42 69.0
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 9.2e-08 61.2 161 32.9
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 9.2e-08 61.2 46 58.7


User provided reference genes

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