Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.3e-182 642.9 318 100.0
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 3.8e-150 535.0 338 81.4
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 3.4e-146 521.9 300 87.7
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 2.8e-132 475.7 287 84.0
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 4.4e-130 468.4 298 75.2
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.2e-129 466.1 297 76.1
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 5.0e-126 454.9 291 74.6
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 1.5e-125 453.4 301 72.1
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 2.5e-125 452.6 289 74.7
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.2e-124 450.3 307 71.3
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.6e-124 449.9 297 74.7
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.1e-123 447.2 297 71.7
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.8e-123 446.4 292 74.0
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.2e-122 443.7 315 67.6
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.6e-122 442.6 297 72.1
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.4e-122 442.2 297 72.1
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.3e-121 440.3 297 71.7
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.7e-121 439.9 292 72.3
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.1e-120 437.2 278 74.1
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.1e-118 428.3 292 72.3
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 7.3e-117 424.5 295 68.1
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 2.1e-116 422.9 297 70.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 6.2e-116 421.4 297 69.4
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 6.8e-115 417.9 310 65.8
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 2.6e-114 416.0 290 68.3
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.4e-114 415.6 294 68.0
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.4e-114 415.2 291 68.7
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 8.4e-113 411.0 286 67.1
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.9e-112 409.8 291 66.7
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.4e-112 409.5 292 66.8
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 4.1e-112 408.7 294 65.3
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 7.1e-112 407.9 292 66.8
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 9.2e-112 407.5 284 69.4
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.2e-111 407.1 293 65.2
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.6e-111 406.8 292 65.1
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 3.5e-111 405.6 284 70.1
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 3.5e-111 405.6 287 65.5
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 7.8e-111 404.4 291 66.3
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.0e-110 404.1 292 66.1
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 2.3e-110 402.9 294 63.6
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.0e-110 402.5 287 66.6
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.0e-110 402.5 291 68.4
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 3.9e-110 402.1 294 65.0
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 6.6e-110 401.4 291 66.3
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.5e-109 400.2 284 65.1
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 3.3e-109 399.1 243 75.7
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 4.3e-109 398.7 283 64.7
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 4.7e-108 395.2 293 62.8
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 4.7e-108 395.2 294 63.6
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 6.2e-108 394.8 297 61.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.8e-107 393.3 280 66.4
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 6.9e-107 391.3 301 63.1
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 9.0e-107 391.0 290 66.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 9.0e-107 391.0 288 64.6
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 9.0e-107 391.0 276 64.1
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.5e-106 390.2 292 63.4
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 2.0e-106 389.8 268 67.2
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 2.0e-106 389.8 283 63.6
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.0e-106 389.8 298 63.8
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.4e-106 388.7 269 67.3
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 9.9e-106 387.5 288 66.0
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 9.9e-106 387.5 263 67.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.3e-105 387.1 272 66.2
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.7e-105 386.7 290 64.5
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.7e-105 386.7 274 66.8
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 3.8e-105 385.6 234 76.9
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 4.9e-105 385.2 254 69.7
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 6.4e-105 384.8 269 67.3
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 7.1e-104 381.3 270 68.9
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 3.5e-103 379.0 290 65.9
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.6e-103 378.6 304 59.9
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.3e-102 377.1 306 59.8
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.3e-102 377.1 291 63.6
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.7e-102 376.7 269 66.2
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 6.6e-102 374.8 294 61.6
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 3.3e-101 372.5 319 56.7
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.6e-100 370.2 290 59.7
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.1e-100 369.8 299 60.5
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 2.4e-99 366.3 299 60.2
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.3e-97 360.5 254 67.7
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.9e-97 359.4 260 64.6
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 4.9e-97 358.6 293 60.4
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 5.4e-96 355.1 255 64.3
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 3.7e-92 342.4 282 56.7
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.8e-91 340.1 273 57.9
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 5.3e-91 338.6 285 54.0
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 3.8e-89 332.4 273 55.7
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 4.9e-89 332.0 285 58.2
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 5.5e-88 328.6 283 55.5
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 2.1e-87 326.6 277 55.6
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.4e-83 313.9 298 55.7
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.2e-81 306.6 233 61.4
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.2e-81 306.6 287 53.7
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.9e-81 306.2 288 54.5
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 4.9e-81 305.4 287 54.0
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 5.5e-80 302.0 301 52.5
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 5.5e-80 302.0 301 52.5
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.2e-79 300.8 290 48.3
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.0e-78 297.7 301 52.5
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.8e-78 297.0 308 51.6
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 2.3e-78 296.6 315 49.5
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.3e-78 296.6 309 52.1
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 3.9e-78 295.8 299 51.8
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.1e-77 294.3 302 52.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 4.3e-77 292.4 288 51.7
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 7.4e-77 291.6 257 54.9
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 9.7e-77 291.2 303 51.5
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-76 289.7 290 51.4
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-75 287.3 295 51.2
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 2.6e-74 283.1 253 53.8
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.5e-74 282.3 277 56.7
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.3e-73 280.8 284 53.2
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 4.2e-72 275.8 272 51.1
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 2.7e-71 273.1 295 49.8
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 1.8e-59 233.8 230 44.8
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.3e-53 213.0 253 44.7
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.7e-52 210.7 201 52.2
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.2e-50 204.5 240 45.0
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 8.5e-49 198.4 295 38.0
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.6e-42 177.6 281 34.9
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 7.7e-42 175.3 232 40.9
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.0e-41 174.9 275 41.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 4.7e-39 166.0 214 44.9
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 4.7e-39 166.0 191 44.0
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 1.0e-38 164.9 242 40.9
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-38 164.1 204 41.2
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.0e-37 160.6 255 41.6
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 2.6e-37 160.2 220 41.4
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 3.4e-37 159.8 197 44.2
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-36 157.5 197 45.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 4.8e-36 156.0 197 43.1
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-35 153.7 220 41.4
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.5e-32 143.7 277 36.5
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 6.8e-30 135.6 145 45.5
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.7e-28 131.0 161 41.6
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.8e-28 130.2 231 34.2
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.8e-28 130.2 143 42.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.0e-26 124.0 145 44.1
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-23 114.4 220 35.5
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-23 114.4 220 35.5
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 9.8e-21 105.1 154 37.7
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 1.6e-18 97.8 70 64.3
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 2.0e-18 97.4 180 32.2
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 3.5e-18 96.7 62 67.7
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 3.5e-18 96.7 62 67.7
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.7e-17 94.4 147 43.5
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 3.9e-17 93.2 95 50.5
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.8e-14 84.3 100 47.0


User provided reference genes

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