Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.4e-99 366.3 182 100.0
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 3.3e-98 361.7 182 98.4
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 1.5e-95 352.8 182 95.1
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.6e-95 352.1 182 95.1
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.7e-94 349.4 182 93.4
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 2.2e-94 349.0 182 94.5
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 2.2e-94 349.0 182 93.4
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 2.9e-94 348.6 179 95.5
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.9e-94 348.6 182 93.4
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.9e-94 348.6 182 93.4
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.9e-94 348.6 182 93.4
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 93.4
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 6.5e-94 347.4 182 92.9
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 6.5e-94 347.4 182 92.9
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.1e-93 346.7 182 92.9
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.4e-93 346.3 182 92.9
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.9e-93 345.9 182 92.3
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 91.8
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 3.2e-93 345.1 182 94.0
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.3
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.3
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 4.2e-93 344.7 180 91.7
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 93.4
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 9.4e-93 343.6 173 98.3
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 9.4e-93 343.6 176 96.0
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-92 343.2 177 94.4
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.2e-92 343.2 181 92.3
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 91.8
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.6e-92 342.8 178 93.3
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.9
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.3
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.3
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 2.1e-92 342.4 180 91.7
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 91.2
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 91.8
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 91.8
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 92.9
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 92.9
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 7.9e-92 340.5 182 89.6
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 89.0
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 89.6
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 90.7
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 92.3
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 90.7
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 90.7
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 90.1
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 90.1
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 90.7
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.6
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.6
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 90.1
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 89.6
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.1e-90 336.7 182 89.6
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 1.5e-90 336.3 178 91.6
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.0e-90 335.9 176 92.6
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 89.0
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 2.6e-90 335.5 181 89.0
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 5.7e-90 334.3 179 90.5
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 87.9
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 90.7
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.7e-89 332.8 176 92.0
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 2.2e-89 332.4 179 90.5
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.2e-89 332.4 182 89.0
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.8e-89 332.0 172 95.3
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 3.7e-89 331.6 172 93.6
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 4.8e-89 331.3 176 92.6
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 8.2e-89 330.5 194 85.6
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 1.1e-88 330.1 182 89.0
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.8e-88 329.3 182 89.0
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.8e-88 329.3 202 82.2
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 2.4e-88 328.9 197 83.2
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 3.1e-88 328.6 182 88.5
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 5.3e-88 327.8 182 88.5
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 5.3e-88 327.8 178 88.8
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 9.1e-88 327.0 173 90.8
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.6e-87 326.2 182 86.8
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.6e-87 326.2 178 90.4
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 2.0e-87 325.9 182 87.9
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 2.0e-87 325.9 182 87.9
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 3.5e-87 325.1 182 87.9
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 7.7e-87 323.9 182 87.4
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 1.3e-86 323.2 182 86.3
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 5.0e-86 321.2 176 86.9
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 2.1e-84 315.8 177 87.0
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 3.6e-84 315.1 178 88.8
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 4.0e-83 311.6 174 87.4
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 8.8e-83 310.5 174 86.8
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 8.8e-83 310.5 174 87.4
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 1.1e-82 310.1 173 87.9
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.5e-82 309.7 182 84.1
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 3.3e-82 308.5 174 86.2
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 3.3e-82 308.5 174 86.2
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 5.7e-82 307.8 208 76.4
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.1e-80 302.0 182 84.6
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 4.2e-77 291.6 183 82.0
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 5.5e-77 291.2 182 80.2
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 5.5e-77 291.2 152 90.8
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.6e-76 288.5 157 91.7
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.4e-75 286.6 182 78.0
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.8e-75 286.2 155 89.0
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 8.8e-75 283.9 177 80.2
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.5e-74 283.1 151 92.7
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.7e-73 279.6 149 87.9
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 4.8e-73 278.1 155 86.5
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 2.2e-70 269.2 155 85.8
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.1e-68 262.7 181 75.7
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 6.8e-67 257.7 139 87.8
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 9.8e-66 253.8 184 75.0
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 3.7e-65 251.9 130 92.3
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 1.1e-64 250.4 128 93.0
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.9e-61 239.6 125 89.6
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 4.7e-60 235.0 184 62.5
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 4.9e-57 224.9 155 74.2
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 4.6e-55 218.4 177 57.1
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 7.8e-55 217.6 185 57.8
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 8.0e-52 207.6 105 95.2
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.5e-50 203.4 105 93.3
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.6e-50 202.6 105 92.4
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.6e-50 202.6 105 93.3
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 4.6e-47 191.8 101 89.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 1.9e-45 186.4 179 59.8
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.1e-43 180.6 100 87.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 8.9e-43 177.6 154 64.3
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.7e-41 173.3 92 92.4
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 2.9e-41 172.6 92 90.2
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.1e-40 167.9 86 93.0
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.9e-37 159.8 91 79.1
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.1e-32 144.1 127 55.9
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.9e-32 143.3 92 80.4
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.7e-31 139.4 87 77.0
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 3.3e-29 132.5 66 92.4
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.3e-25 120.6 77 79.2
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.9e-24 116.7 70 82.9
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.7e-17 93.6 48 87.5
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.1e-13 80.9 49 79.6
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.5e-13 80.5 182 30.8
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.3e-13 79.3 182 31.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.6e-12 77.0 182 30.8
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 6.2e-12 75.1 182 28.6
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 8.1e-12 74.7 52 63.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 2.4e-11 73.2 181 29.3
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 6.9e-11 71.6 182 28.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 6.9e-11 71.6 182 28.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 5.8e-10 68.6 180 31.7
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.9e-08 63.5 142 31.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.9e-08 63.5 198 24.2


User provided reference genes

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