Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.8e-61 238.4 118 100.0
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 4.1e-57 224.6 118 93.2
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.9e-54 215.7 118 89.0
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 7.3e-54 213.8 118 89.0
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 4.4e-51 204.5 159 69.2
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.3e-42 176.4 114 76.3
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.7e-42 176.0 116 75.0
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.4e-41 172.9 114 78.9
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.4e-41 172.2 115 76.5
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.2e-41 170.2 114 71.9
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.2e-40 169.9 114 78.1
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.6e-40 169.5 114 78.1
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 3.5e-40 168.3 114 75.4
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 4.6e-40 167.9 114 73.7
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 4.6e-40 167.9 116 69.8
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 7.8e-40 167.2 116 76.7
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.0e-39 166.8 114 72.8
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 2.3e-39 165.6 113 77.9
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.9e-39 164.9 114 71.9
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 8.6e-39 163.7 114 74.6
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 8.6e-39 163.7 114 71.9
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.1e-38 163.3 115 74.8
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.5e-38 162.9 114 71.1
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.9e-38 162.5 115 74.8
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.5e-38 162.2 119 71.4
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 3.3e-38 161.8 115 73.0
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 4.3e-38 161.4 114 71.9
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 5.6e-38 161.0 114 74.6
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.2e-37 159.8 118 71.2
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.6e-37 159.5 114 71.9
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.1e-37 159.1 114 70.2
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.1e-37 159.1 114 69.3
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 2.8e-37 158.7 114 70.2
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 2.8e-37 158.7 114 73.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.6e-37 158.3 115 70.4
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.2e-37 157.5 114 69.3
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.4e-36 156.4 111 72.1
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.4e-36 156.4 115 73.0
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.8e-36 156.0 114 71.9
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.8e-36 156.0 114 71.9
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.8e-36 156.0 114 71.9
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.3e-36 155.6 117 70.1
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 3.1e-36 155.2 114 72.8
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.2e-36 154.5 114 71.9
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 6.8e-36 154.1 115 71.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 6.8e-36 154.1 118 71.2
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 6.8e-36 154.1 113 72.6
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 8.9e-36 153.7 114 70.2
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 1.2e-35 153.3 114 69.3
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.2e-35 153.3 114 66.7
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-35 152.5 114 71.1
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.0e-35 152.5 93 80.6
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-35 152.1 114 70.2
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.6e-35 152.1 91 80.2
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.6e-35 152.1 142 58.5
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.4e-35 151.8 114 71.1
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 3.4e-35 151.8 91 80.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.8e-35 151.0 120 66.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 5.8e-35 151.0 117 66.7
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 5.8e-35 151.0 87 83.9
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 5.8e-35 151.0 89 79.8
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 7.6e-35 150.6 114 67.5
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.3e-34 149.8 122 67.2
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.3e-34 149.8 87 82.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.7e-34 149.4 116 65.5
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.7e-34 149.4 116 69.0
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.2e-34 149.1 116 69.0
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.2e-34 149.1 112 66.1
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.9e-34 148.7 125 65.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.9e-34 148.7 114 64.9
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.8e-34 148.3 117 68.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 3.8e-34 148.3 117 68.4
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 4.9e-34 147.9 114 64.0
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 6.4e-34 147.5 87 83.9
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 8.4e-34 147.1 116 65.5
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.1e-33 146.7 115 69.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.4e-33 146.4 116 63.8
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.4e-33 146.4 117 68.4
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.9e-33 146.0 114 61.4
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.9e-33 146.0 116 68.1
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.4e-33 145.6 115 68.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.2e-33 145.2 90 76.7
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 3.2e-33 145.2 114 60.5
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 3.2e-33 145.2 91 74.7
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 9.2e-33 143.7 91 73.6
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.2e-32 143.3 114 59.6
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-32 142.9 114 62.3
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.6e-32 142.9 114 64.0
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-32 142.1 114 62.3
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-32 142.1 115 62.6
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.5e-32 141.7 114 59.6
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 4.6e-32 141.4 114 61.4
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 6.0e-32 141.0 114 61.4
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 7.8e-32 140.6 121 62.8
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.0e-31 140.2 114 63.2
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.0e-31 140.2 114 61.4
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.7e-31 139.4 114 58.8
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 3.0e-31 138.7 114 60.5
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 3.0e-31 138.7 148 52.7
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.9e-31 138.3 116 62.9
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 5.1e-31 137.9 87 75.9
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.1e-31 137.9 114 63.2
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 6.6e-31 137.5 114 61.4
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 8.6e-31 137.1 114 61.4
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 8.6e-31 137.1 87 78.2
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.1e-30 136.7 115 60.9
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.5e-30 136.3 88 77.3
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.5e-30 135.6 114 62.3
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.5e-30 135.6 114 59.6
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.5e-30 135.6 114 59.6
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 3.3e-30 135.2 87 74.7
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 5.6e-30 134.4 87 75.9
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.2e-29 133.3 111 62.2
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.2e-29 133.3 164 48.8
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.1e-29 132.5 115 56.5
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 6.2e-29 131.0 113 56.6
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 8.1e-29 130.6 92 68.5
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.4e-28 129.8 110 60.9
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 6.9e-28 127.5 80 77.5
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 9.9e-27 123.6 95 63.2
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.7e-26 122.9 110 56.4
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 3.8e-26 121.7 120 55.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 8.4e-26 120.6 122 54.9
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.1e-25 120.2 77 76.6
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-25 119.4 113 60.2
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.2e-25 118.6 212 38.7
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.2e-25 118.6 110 55.5
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 7.1e-25 117.5 90 65.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.6e-24 114.8 102 64.7
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 7.8e-24 114.0 83 63.9
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.3e-23 113.2 83 63.9
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.3e-23 113.2 80 65.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.7e-23 112.8 120 50.8
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.7e-23 112.8 108 60.2
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 3.0e-23 112.1 98 67.3
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.1e-22 110.2 89 69.7
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.5e-22 109.0 81 63.0
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 3.6e-21 105.1 89 66.3
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.6e-21 105.1 89 64.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.2e-21 104.4 92 64.1
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.8e-20 102.8 94 57.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 6.9e-20 100.9 94 54.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.3e-18 96.7 72 65.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 3.2e-17 92.0 69 60.9
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 7.1e-17 90.9 52 80.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-16 89.0 76 56.6
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-16 89.0 76 56.6
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-16 89.0 73 60.3
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 4.6e-16 88.2 97 47.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.8e-15 86.3 60 73.3
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 7.4e-14 80.9 49 81.6
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 8.1e-13 77.4 85 51.8
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 3.1e-12 75.5 89 43.8
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 5.3e-12 74.7 55 65.5
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 6.9e-12 74.3 55 63.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.6e-11 72.4 46 78.3
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 3.4e-11 72.0 71 53.5
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.5e-09 64.7 81 48.1
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 2.1e-08 62.8 62 54.8
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.0e-07 60.5 71 45.1
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.0e-07 60.5 58 63.8
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 1.3e-07 60.1 65 44.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 1.3e-07 60.1 65 44.6


User provided reference genes

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