Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G007750 Populus trichocarpa HOM05D000011 ORTHO05D000157 4.3e-71 271.2 133 100.0
Potri.005G009450 Populus trichocarpa HOM05D000011 ORTHO05D000157 5.0e-43 177.9 90 97.8
Potri.005G009101 Populus trichocarpa HOM05D000011 ORTHO05D000157 1.9e-42 176.0 90 96.7
Potri.018G013500 Populus trichocarpa HOM05D000011 ORTHO05D000157 6.5e-27 124.4 90 71.1
CSS0033798 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 5.5e-26 121.3 105 61.9
CSS0022083 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 3.7e-22 108.6 104 54.8
CSS0022127 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 6.8e-16 87.8 65 66.2
CSS0047102 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 2.0e-15 86.3 65 64.6
Nn7g36778 Nelumbo nucifera HOM05D000011 ORTHO05D000157 6.3e-14 81.3 108 45.4
Actinidia05846 Actinidia chinensis HOM05D000011 ORTHO05D000157 1.1e-13 80.5 65 60.0
Phvul.002G133600 Phaseolus vulgaris HOM05D000011 ORTHO05D000157 9.2e-13 77.4 98 46.9
CSS0000501 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 1.2e-12 77.0 94 48.9
VMungo1215G2922 Vigna mungo HOM05D000011 ORTHO05D000157 4.5e-12 75.1 98 45.9
Nn7g36792 Nelumbo nucifera HOM05D000011 ORTHO05D000157 1.0e-11 73.9 100 43.0
Psat2g139760 Pisum sativum HOM05D000011 ORTHO05D000157 1.3e-11 73.6 127 36.2
Glyma.09G210400 Glycine max HOM05D000011 ORTHO05D000157 2.9e-11 72.4 98 44.9
Eucgr.E01296 Eucalyptus grandis HOM05D000011 ORTHO05D000157 3.9e-11 72.0 127 37.8
CSS0026571 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 5.0e-11 71.6 49 67.3
Dinv06908 Davidia involucrata HOM05D000011 ORTHO05D000157 5.0e-11 71.6 95 42.1
Glyma.01G010700 Glycine max HOM05D000011 ORTHO05D000157 5.0e-11 71.6 98 44.9
TAR624G1321 Trochodendron aralioides HOM05D000011 ORTHO05D000157 5.0e-11 71.6 105 36.2
QL12p000245 Quercus lobata HOM05D000011 ORTHO05D000157 3.3e-10 68.9 96 43.8
TAR624G0270 Trochodendron aralioides HOM05D000011 ORTHO05D000157 3.3e-10 68.9 115 38.3
Oeu058072.1 Olea europaea HOM05D000011 ORTHO05D000157 5.6e-10 68.2 109 40.4
Actinidia31360 Actinidia chinensis HOM05D000011 ORTHO05D000157 7.3e-10 67.8 100 39.0
Eucgr.E01304 Eucalyptus grandis HOM05D000011 ORTHO05D000157 7.3e-10 67.8 107 41.1
ATR1149G072 Amborella trichopoda HOM05D000011 ORTHO05D000157 1.2e-09 67.0 109 42.2
Lj2g0027735 Lotus japonicus HOM05D000011 ORTHO05D000157 1.6e-09 66.6 99 42.4
Dinv22105 Davidia involucrata HOM05D000011 ORTHO05D000157 2.1e-09 66.2 112 35.7
Haze_11585 Corylus avellana HOM05D000011 ORTHO05D000157 2.8e-09 65.9 123 36.6
MBI14_g43082_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 3.6e-09 65.5 111 40.5
TPR.G14529 Trifolium pratense HOM05D000011 ORTHO05D000157 4.7e-09 65.1 101 41.6
arahy.Tifrunner.gnm1.ann1.0MH239 Arachis hypogaea HOM05D000011 ORTHO05D000157 6.1e-09 64.7 92 43.5
arahy.Tifrunner.gnm1.ann1.WIN0ZV Arachis hypogaea HOM05D000011 ORTHO05D000157 6.1e-09 64.7 92 43.5
CSS0034693 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 6.1e-09 64.7 106 39.6
Medtr5g027870 Medicago truncatula HOM05D000011 ORTHO05D000157 8.0e-09 64.3 106 37.7
Zm00001eb061810 Zea mays HOM05D000022 ORTHO05D018062 8.0e-09 64.3 116 37.9
Dinv19542 Davidia involucrata HOM05D000011 ORTHO05D000157 1.0e-08 63.9 100 43.0
Thecc.03G313200 Theobroma cacao HOM05D000011 ORTHO05D000157 1.0e-08 63.9 128 32.8
Eucgr.E01306 Eucalyptus grandis HOM05D000011 ORTHO05D000157 1.4e-08 63.5 107 40.2
FAN18G4390 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.4e-08 63.5 136 35.3
MBI14_g21557_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 1.4e-08 63.5 100 40.0
Nitab4.5_0001542g0150 Nicotiana tabacum HOM05D000011 ORTHO05D000157 1.4e-08 63.5 105 39.0
MD06G1024500 Malus domestica HOM05D000011 ORTHO05D000157 1.8e-08 63.2 126 35.7
Nn7g36790 Nelumbo nucifera HOM05D000011 ORTHO05D000157 1.8e-08 63.2 81 43.2
RcHm_v2.0_Chr2g0124571 Rosa chinensis HOM05D000011 ORTHO05D000157 2.3e-08 62.8 93 40.9
Eucgr.H04287 Eucalyptus grandis HOM05D000011 ORTHO05D000157 3.1e-08 62.4 103 42.7
FAN04G2275 Fragaria x ananassa HOM05D000011 ORTHO05D000157 4.0e-08 62.0 70 48.6
Prupe.6G146200 Prunus persica HOM05D000011 ORTHO05D000157 4.0e-08 62.0 100 40.0
QL03p068927 Quercus lobata HOM05D000011 ORTHO05D000157 4.0e-08 62.0 106 41.5
TAR365G0763 Trochodendron aralioides HOM05D000011 ORTHO05D000157 4.0e-08 62.0 115 36.5
Zm00001eb200750 Zea mays HOM05D000011 ORTHO05D018062 4.0e-08 62.0 124 34.7
Duzib068G1466 Durio zibethinus HOM05D000011 ORTHO05D000157 5.2e-08 61.6 70 52.9
FvH4_5g23400 Fragaria vesca HOM05D000011 ORTHO05D000157 5.2e-08 61.6 70 48.6
TAR374G0512 Trochodendron aralioides HOM05D000011 ORTHO05D000157 5.2e-08 61.6 102 37.3
Cc00_g27220 Coffea canephora HOM05D000011 ORTHO05D000157 6.8e-08 61.2 96 40.6
RcHm_v2.0_Chr7g0212471 Rosa chinensis HOM05D000011 ORTHO05D000157 6.8e-08 61.2 70 48.6
CSS0041004 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 8.9e-08 60.8 110 39.1
MBI14_g07049_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 8.9e-08 60.8 76 47.4
COL.COLO4_16904 Corchorus olitorius HOM05D000011 ORTHO05D000157 1.2e-07 60.5 70 51.4
Eucgr.E01278 Eucalyptus grandis HOM05D000011 ORTHO05D000157 1.2e-07 60.5 120 36.7
Medtr5g027910 Medicago truncatula HOM05D000011 ORTHO05D000157 1.2e-07 60.5 127 32.3
Cc00_g08280 Coffea canephora HOM05D000011 ORTHO05D000157 1.5e-07 60.1 101 36.6
Hma1.2p1_0803F.1_g220790 Hydrangea macrophylla HOM05D000011 ORTHO05D000157 1.5e-07 60.1 76 44.7
MD14G1174200 Malus domestica HOM05D000011 ORTHO05D000157 2.0e-07 59.7 102 36.3
Duzib068G0532 Durio zibethinus HOM05D000011 ORTHO05D000157 2.6e-07 59.3 128 31.2
Migut.M01789 Erythranthe guttata HOM05D000011 ORTHO05D000157 2.6e-07 59.3 131 30.5
Prupe.4G149700 Prunus persica HOM05D000011 ORTHO05D000157 2.6e-07 59.3 101 35.6
Prupe.5G025600 Prunus persica HOM05D000011 ORTHO05D000157 2.6e-07 59.3 112 34.8
MBI14_g22869_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 3.4e-07 58.9 76 46.1
Dinv31507 Davidia involucrata HOM05D000011 ORTHO05D000157 4.4e-07 58.5 88 40.9
FvH4_5g23470 Fragaria vesca HOM05D000011 ORTHO05D000157 4.4e-07 58.5 71 47.9
FAN18G2053 Fragaria x ananassa HOM05D000011 ORTHO05D000157 4.4e-07 58.5 71 47.9
Glyma.18G093600 Glycine max HOM05D000011 ORTHO05D000157 4.4e-07 58.5 112 36.6
Potri.001G134601 Populus trichocarpa HOM05D000011 ORTHO05D000157 4.4e-07 58.5 69 40.6
TPR.G19466 Trifolium pratense HOM05D000011 ORTHO05D000157 4.4e-07 58.5 150 28.7
Aqoxy2G01097 Aquilegia oxysepala HOM05D000011 ORTHO05D000157 5.8e-07 58.2 102 38.2
FvH4_5g23420 Fragaria vesca HOM05D000011 ORTHO05D000157 5.8e-07 58.2 125 33.6
FAN04G2851 Fragaria x ananassa HOM05D000011 ORTHO05D000157 5.8e-07 58.2 125 33.6
FAN08G1905 Fragaria x ananassa HOM05D000011 ORTHO05D000157 5.8e-07 58.2 125 32.8
FAN13G2629 Fragaria x ananassa HOM05D000011 ORTHO05D000157 5.8e-07 58.2 125 33.6
MD17G1163600 Malus domestica HOM05D000011 ORTHO05D000157 5.8e-07 58.2 84 41.7
Thecc.03G312800 Theobroma cacao HOM05D000011 ORTHO05D000157 5.8e-07 58.2 70 48.6
Duzib205G1590 Durio zibethinus HOM05D000011 ORTHO05D000157 7.5e-07 57.8 70 50.0
Glyma.18G094200 Glycine max HOM05D000011 ORTHO05D000157 7.5e-07 57.8 112 37.5
TAR362G0141 Trochodendron aralioides HOM05D000011 ORTHO05D000157 7.5e-07 57.8 63 49.2
arahy.Tifrunner.gnm1.ann1.2JZ6N1 Arachis hypogaea HOM05D000011 ORTHO05D000157 9.8e-07 57.4 72 41.7
arahy.Tifrunner.gnm1.ann1.K1RG44 Arachis hypogaea HOM05D000011 ORTHO05D000157 9.8e-07 57.4 72 41.7
AUR62018776 Chenopodium quinoa HOM05D000011 ORTHO05D000157 9.8e-07 57.4 100 35.0
Dinv29025 Davidia involucrata HOM05D000011 ORTHO05D000157 9.8e-07 57.4 73 43.8
Gorai.008G222700 Gossypium raimondii HOM05D000011 ORTHO05D000157 9.8e-07 57.4 63 49.2
MD09G1164200 Malus domestica HOM05D000011 ORTHO05D000157 9.8e-07 57.4 131 32.1
Cfa011812 Carpinus fangiana HOM05D000011 ORTHO05D000157 1.3e-06 57.0 135 29.6
Migut.M01606 Erythranthe guttata HOM05D000011 ORTHO05D000157 1.3e-06 57.0 150 25.3
Potri.001G134300 Populus trichocarpa HOM05D000011 ORTHO05D000157 1.3e-06 57.0 69 40.6
Potri.001G134701 Populus trichocarpa HOM05D000011 ORTHO05D000157 1.3e-06 57.0 69 40.6
Prupe.5G025500 Prunus persica HOM05D000011 ORTHO05D000157 1.3e-06 57.0 84 40.5
RcHm_v2.0_Chr7g0211261 Rosa chinensis HOM05D000011 ORTHO05D000157 1.3e-06 57.0 70 45.7
Thecc.03G313100 Theobroma cacao HOM05D000011 ORTHO05D000157 1.3e-06 57.0 63 46.0
ATR0730G223 Amborella trichopoda HOM05D000011 ORTHO05D000157 1.7e-06 56.6 98 37.8
Nn7g36793 Nelumbo nucifera HOM05D000011 ORTHO05D000157 1.7e-06 56.6 63 47.6
Oeu058059.1 Olea europaea HOM05D000011 ORTHO05D000157 1.7e-06 56.6 93 37.6
Potri.001G134450 Populus trichocarpa HOM05D000011 ORTHO05D000157 1.7e-06 56.6 69 40.6
Cc00_g31010 Coffea canephora HOM05D000011 ORTHO05D000157 2.2e-06 56.2 104 37.5
FvH4_5g22710 Fragaria vesca HOM05D000011 ORTHO05D000157 2.2e-06 56.2 70 45.7
FAN04G2102 Fragaria x ananassa HOM05D000011 ORTHO05D000157 2.2e-06 56.2 70 45.7
FAN13G2724 Fragaria x ananassa HOM05D000011 ORTHO05D000157 2.2e-06 56.2 70 45.7
FAN18G1424 Fragaria x ananassa HOM05D000011 ORTHO05D000157 2.2e-06 56.2 70 45.7
FAN18G3319 Fragaria x ananassa HOM05D000011 ORTHO05D000157 2.2e-06 56.2 70 45.7
RcHm_v2.0_Chr7g0212481 Rosa chinensis HOM05D000011 ORTHO05D000157 2.2e-06 56.2 125 32.8
Sabra01G0104100 Salix brachista HOM05D000011 ORTHO05D000157 2.2e-06 56.2 70 42.9
TAR362G0443 Trochodendron aralioides HOM05D000011 ORTHO05D000157 2.2e-06 56.2 63 47.6
Ca_25156_v3 Cicer arietinum L. HOM05D000011 ORTHO05D000157 2.9e-06 55.8 70 42.9
Duzib177G0808 Durio zibethinus HOM05D000011 ORTHO05D000157 2.9e-06 55.8 112 33.9
Duzib205G1354 Durio zibethinus HOM05D000011 ORTHO05D000157 2.9e-06 55.8 63 42.9
Gohir.A12G204900 Gossypium hirsutum HOM05D000011 ORTHO05D000157 2.9e-06 55.8 63 47.6
Actinidia14768 Actinidia chinensis HOM05D000011 ORTHO05D000157 3.7e-06 55.5 67 44.8
Gohir.D12G207300 Gossypium hirsutum HOM05D000011 ORTHO05D000157 3.7e-06 55.5 63 47.6
Manes.18G102634 Manihot esculenta HOM05D000011 ORTHO05D000157 3.7e-06 55.5 64 45.3
Os11g0655700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 3.7e-06 55.5 137 30.7
RcHm_v2.0_Chr2g0168221 Rosa chinensis HOM05D000011 ORTHO05D000157 3.7e-06 55.5 107 32.7
Cc03_g14580 Coffea canephora HOM05D000009 ORTHO05D000008 4.9e-06 55.1 114 33.3
Cc08_g04600 Coffea canephora HOM05D000011 ORTHO05D000157 4.9e-06 55.1 105 34.3
Migut.M01602 Erythranthe guttata HOM05D000011 ORTHO05D000157 4.9e-06 55.1 152 25.7
Lalb_Chr05g0215641 Lupinus albus HOM05D000011 ORTHO05D000157 4.9e-06 55.1 80 37.5
Medtr5g027860 Medicago truncatula HOM05D000011 ORTHO05D000157 4.9e-06 55.1 70 42.9
Nn5g28381 Nelumbo nucifera HOM05D000011 ORTHO05D000157 4.9e-06 55.1 82 39.0
Phvul.002G133400 Phaseolus vulgaris HOM05D000011 ORTHO05D000157 4.9e-06 55.1 69 43.5
TAR626G1253 Trochodendron aralioides HOM05D000011 ORTHO05D000157 4.9e-06 55.1 66 43.9
Actinidia34696 Actinidia chinensis HOM05D000011 ORTHO05D000157 6.4e-06 54.7 101 37.6
Cfa014931 Carpinus fangiana HOM05D000011 ORTHO05D000157 6.4e-06 54.7 135 28.9
Cc08_g00520 Coffea canephora HOM05D000011 ORTHO05D000157 6.4e-06 54.7 67 41.8
Glyma.08G319300 Glycine max HOM05D000011 ORTHO05D000157 6.4e-06 54.7 101 38.6
MD09G1164500 Malus domestica HOM05D000011 ORTHO05D000157 6.4e-06 54.7 131 32.1
MD11G1045600 Malus domestica HOM05D000009 ORTHO05D000008 6.4e-06 54.7 130 37.7
Potri.001G134500 Populus trichocarpa HOM05D000011 ORTHO05D000157 6.4e-06 54.7 70 42.9
TPR.G1964 Trifolium pratense HOM05D000011 ORTHO05D000157 6.4e-06 54.7 100 38.0
TPR.G24226 Trifolium pratense HOM05D000011 ORTHO05D000157 6.4e-06 54.7 70 42.9
VMungo1215G1620 Vigna mungo HOM05D000011 ORTHO05D000157 6.4e-06 54.7 69 43.5
Medtr5g027810 Medicago truncatula HOM05D000011 ORTHO05D000157 8.3e-06 54.3 70 42.9
TPR.G19455 Trifolium pratense HOM05D000011 ORTHO05D000157 8.3e-06 54.3 70 42.9


User provided reference genes

Program Settings