Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.8e-109 399.8 297 100.0
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 3.9e-96 355.5 302 92.1
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 3.9e-96 355.5 302 92.1
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 5.6e-87 325.1 297 70.4
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 4.2e-82 308.9 313 63.6
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 7.4e-79 298.1 343 67.3
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 6.2e-78 295.0 299 67.6
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.8e-77 293.5 300 63.3
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.8e-77 293.5 301 79.1
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 3.1e-77 292.7 302 66.6
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 5.3e-77 292.0 298 67.1
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.5e-76 290.4 298 66.8
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 3.4e-76 289.3 302 66.2
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 7.6e-76 288.1 298 64.4
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 2.9e-75 286.2 295 76.6
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 8.4e-75 284.6 306 62.7
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 8.4e-75 284.6 273 68.1
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.4e-74 283.9 296 79.1
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.4e-74 283.9 300 59.3
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 4.2e-74 282.3 300 59.7
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.5e-74 282.0 305 65.6
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 5.5e-74 282.0 295 65.8
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 9.3e-74 281.2 298 78.5
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.2e-73 280.8 297 56.6
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.6e-73 280.4 304 57.2
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 2.7e-73 279.6 307 73.9
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 4.6e-73 278.9 305 64.6
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 2.3e-72 276.6 311 61.1
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 6.7e-72 275.0 297 68.0
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.1e-71 274.2 299 59.5
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.1e-71 274.2 298 61.1
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.5e-71 273.9 304 63.2
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.5e-71 273.9 300 60.7
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 2.5e-71 273.1 299 64.5
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 5.7e-71 271.9 300 63.0
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 7.4e-71 271.6 302 63.9
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 9.7e-71 271.2 301 60.1
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 1.3e-70 270.8 305 65.2
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 2.2e-70 270.0 301 60.1
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.8e-70 269.6 296 54.1
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.8e-70 269.6 305 64.9
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 4.8e-70 268.9 303 52.5
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.8e-70 268.9 298 59.4
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 6.3e-70 268.5 299 59.5
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.8e-69 266.9 269 57.2
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.8e-69 266.9 297 53.5
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 2.4e-69 266.5 304 57.9
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 4.1e-69 265.8 295 59.3
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 3.4e-68 262.7 304 55.9
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 7.7e-68 261.5 297 75.1
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 7.7e-68 261.5 311 52.1
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.0e-67 261.2 301 61.8
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 2.9e-67 259.6 304 61.5
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.9e-67 259.6 298 62.8
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 3.8e-67 259.2 296 59.5
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 3.8e-67 259.2 299 71.6
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 6.5e-67 258.5 308 52.9
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 3.2e-66 256.1 303 52.8
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 7.2e-66 255.0 305 55.7
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 7.2e-66 255.0 304 56.6
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.7e-65 253.1 305 70.5
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 6.1e-65 251.9 340 55.9
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 7.9e-65 251.5 309 68.6
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.0e-64 251.1 315 57.5
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.4e-64 250.8 311 68.2
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.3e-64 250.0 300 62.0
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 3.9e-64 249.2 302 52.6
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 5.1e-64 248.8 252 64.3
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 6.7e-64 248.4 305 55.1
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 8.8e-64 248.1 301 69.1
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 7.4e-63 245.0 308 52.9
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 7.4e-63 245.0 331 59.5
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.3e-62 244.2 303 63.7
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.7e-62 242.7 300 58.7
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.1e-61 241.1 305 48.2
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.1e-61 241.1 305 48.5
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.4e-61 240.0 314 56.4
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 4.1e-61 239.2 304 72.4
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.0e-59 234.6 301 67.4
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.7e-59 233.8 304 67.1
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 5.0e-59 232.3 298 47.7
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.0e-56 224.6 177 63.8
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.4e-56 224.2 306 51.6
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.8e-56 223.8 298 73.5
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.0e-56 223.0 303 66.7
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 5.1e-56 222.2 296 60.5
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.1e-55 221.1 307 58.6
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 1.5e-55 220.7 301 56.5
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 1.5e-55 220.7 301 56.5
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.0e-55 220.3 301 60.8
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.0e-55 220.3 301 60.8
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.0e-55 220.3 301 60.8
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 9.7e-55 218.0 302 56.6
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.7e-54 217.2 301 54.8
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 4.8e-54 215.7 292 53.8
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 4.8e-54 215.7 302 65.2
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.1e-53 214.5 339 49.0
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.4e-53 214.2 304 64.1
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.4e-53 214.2 282 52.8
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 3.1e-53 213.0 194 59.3
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 7.0e-53 211.8 301 52.5
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.5e-52 210.7 284 53.5
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 6.5e-51 205.3 329 48.9
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.8e-46 189.9 361 54.3
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 2.8e-46 189.9 272 66.2
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.8e-46 189.1 189 53.4
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.1e-45 188.0 280 56.1
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.6e-44 184.1 311 51.4
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 5.5e-42 175.6 152 88.8
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 2.4e-37 160.2 184 46.7
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.5e-35 152.1 158 70.9
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 9.4e-34 148.3 102 72.5
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.0e-32 143.3 189 47.1
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.4e-29 134.4 178 43.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 5.5e-26 122.5 128 48.4
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 9.5e-26 121.7 92 62.0
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 6.8e-24 115.5 226 38.1
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 2.2e-22 110.5 137 46.0
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.0e-19 101.7 119 56.3
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.0e-19 101.7 128 60.2
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 6.8e-16 89.0 144 46.5
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.7e-14 83.2 47 78.7
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 5.4e-13 79.3 55 67.3
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 7.0e-13 79.0 55 67.3
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.3e-11 74.7 48 68.8
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 2.5e-10 70.5 43 72.1
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 2.5e-10 70.5 43 72.1
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 3.6e-09 66.6 52 69.2
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 8.0e-09 65.5 30 96.7
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 4.0e-08 63.2 51 64.7
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.5e-07 61.2 29 93.1
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 7.5e-07 58.9 59 50.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 8.3e-06 55.5 50 52.0


User provided reference genes

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