Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G002500 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.5e-46 187.6 96 100.0
Potri.005G002600 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.5e-46 187.6 96 100.0
Sabra05G0014100 Salix brachista HOM05D002165 ORTHO05D001531 1.4e-39 166.0 97 91.8
Potri.013G001800 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.4e-33 144.4 96 82.3
Potri.013G001900 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.4e-33 144.4 96 82.3
Potri.013G002000 Populus trichocarpa HOM05D002165 ORTHO05D001531 2.9e-32 141.7 96 81.2
Sabra13G0001300 Salix brachista HOM05D002165 ORTHO05D001531 4.1e-31 137.9 96 78.1
Sabra13G0001400 Salix brachista HOM05D002165 ORTHO05D001531 9.2e-31 136.7 96 78.1
Sabra13G0005300 Salix brachista HOM05D002165 ORTHO05D001531 3.7e-24 114.8 96 67.7
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 2.5e-12 75.5 82 52.4
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 5.6e-12 74.3 97 48.5
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 2.1e-11 72.4 92 51.1
Manes.08G107400 Manihot esculenta HOM05D002165 ORTHO05D001531 8.1e-11 70.5 93 51.6
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 5.2e-10 67.8 93 46.2
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 5.2e-10 67.8 93 46.2
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 8.9e-10 67.0 83 55.4
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 2.6e-09 65.5 85 47.1
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 2.6e-09 65.5 86 48.8
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 4.4e-09 64.7 85 48.2
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 4.4e-09 64.7 85 48.2
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 4.4e-09 64.7 85 48.2
Thecc.05G329700 Theobroma cacao HOM05D002165 ORTHO05D001531 4.4e-09 64.7 84 50.0
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 4.4e-09 64.7 85 42.4
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.8e-09 64.3 88 46.6
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.8e-09 64.3 88 46.6
Manes.15G075800 Manihot esculenta HOM05D002165 ORTHO05D001531 5.8e-09 64.3 93 47.3
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.6e-09 63.9 83 49.4
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 9.9e-09 63.5 86 47.7
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 1.3e-08 63.2 85 48.2
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 1.3e-08 63.2 85 48.2
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 1.3e-08 63.2 85 48.2
Gohir.D13G184400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.3e-08 63.2 93 50.5
Gorai.013G210100 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.3e-08 63.2 93 50.5
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.2e-08 62.4 91 49.5
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.9e-08 62.0 96 41.7
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.9e-08 62.0 96 41.7
Gohir.A13G177800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 2.9e-08 62.0 93 50.5
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 2.9e-08 62.0 78 43.6
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.8e-08 61.6 84 48.8
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 4.9e-08 61.2 95 41.1
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 6.4e-08 60.8 96 40.6
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 8.4e-08 60.5 75 49.3
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 1.1e-07 60.1 86 47.7
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.1e-07 60.1 83 45.8
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.4e-07 59.7 83 47.0
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.9e-07 59.3 84 45.2
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.9e-07 59.3 88 46.6
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 1.9e-07 59.3 85 42.4
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.4e-07 58.9 91 47.3
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 2.4e-07 58.9 96 43.8
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 3.2e-07 58.5 91 47.3
QL03p011025 Quercus lobata HOM05D016210 ORTHO05D001531 3.2e-07 58.5 75 50.7
QL03p011084 Quercus lobata HOM05D016210 ORTHO05D001531 3.2e-07 58.5 75 49.3
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 4.2e-07 58.2 85 47.1
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.2e-07 58.2 82 47.6
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 4.2e-07 58.2 96 39.6
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.2e-07 58.2 96 39.6
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 5.4e-07 57.8 86 46.5
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.4e-07 57.8 82 47.6
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 7.1e-07 57.4 95 40.0
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 9.3e-07 57.0 86 46.5
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 1.2e-06 56.6 85 44.7
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 1.2e-06 56.6 97 41.2
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 1.6e-06 56.2 85 45.9
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 1.6e-06 56.2 85 45.9
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 1.6e-06 56.2 85 45.9
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 2.1e-06 55.8 75 48.0
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 2.1e-06 55.8 85 43.5
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 2.1e-06 55.8 88 45.5
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.7e-06 55.5 90 42.2
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 4.6e-06 54.7 86 46.5
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 4.6e-06 54.7 77 46.8
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 4.6e-06 54.7 77 46.8
Gohir.D13G116800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 4.6e-06 54.7 90 46.7
Gorai.013G131300 Gossypium raimondii HOM05D002165 ORTHO05D001531 4.6e-06 54.7 90 46.7
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 6.0e-06 54.3 86 43.0
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 6.0e-06 54.3 84 46.4
Gohir.A13G113800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 6.0e-06 54.3 90 46.7
Nitab4.5_0000800g0060 Nicotiana tabacum HOM05D002165 ORTHO05D001531 6.0e-06 54.3 67 49.3
Nitab4.5_0003573g0030 Nicotiana tabacum HOM05D002165 ORTHO05D001531 6.0e-06 54.3 67 49.3
Nitab4.5_0003573g0040 Nicotiana tabacum HOM05D002165 ORTHO05D001531 6.0e-06 54.3 67 49.3
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 7.8e-06 53.9 85 44.7
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 7.8e-06 53.9 75 46.7
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 7.8e-06 53.9 85 44.7
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 7.8e-06 53.9 85 44.7
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 7.8e-06 53.9 85 44.7
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 7.8e-06 53.9 85 44.7
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 7.8e-06 53.9 85 44.7
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 7.8e-06 53.9 84 42.9


User provided reference genes

Program Settings