Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 3.9e-58 228.0 124 100.0
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 6.1e-35 151.0 122 69.7
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 1.0e-18 97.1 117 52.1
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 5.2e-18 94.7 116 50.9
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 8.3e-16 87.4 104 50.0
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 7.0e-15 84.3 96 52.1
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 9.1e-15 84.0 96 52.1
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 2.7e-14 82.4 70 62.9
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 4.5e-14 81.6 76 61.8
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 5.9e-14 81.3 98 50.0
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 7.7e-14 80.9 83 50.6
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 7.7e-14 80.9 96 51.0
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.7e-13 79.7 102 49.0
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 2.9e-13 79.0 100 47.0
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.9e-13 79.0 97 51.5
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 6.5e-13 77.8 102 47.1
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 1.1e-12 77.0 96 50.0
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 1.5e-12 76.6 82 51.2
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 2.5e-12 75.9 101 46.5
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 3.2e-12 75.5 111 45.9
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 5.5e-12 74.7 100 45.0
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 7.2e-12 74.3 69 62.3
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 7.2e-12 74.3 69 68.1
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 7.2e-12 74.3 94 52.1
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 7.2e-12 74.3 108 44.4
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.2e-11 73.6 69 60.9
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 1.6e-11 73.2 82 61.0
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 1.6e-11 73.2 54 63.0
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 1.6e-11 73.2 80 51.2
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 2.1e-11 72.8 76 56.6
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 3.6e-11 72.0 67 56.7
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 3.6e-11 72.0 99 48.5
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 3.6e-11 72.0 80 50.0
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 4.7e-11 71.6 62 62.9
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 8.0e-11 70.9 73 58.9
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 1.0e-10 70.5 63 71.4
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 1.0e-10 70.5 86 52.3
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.4e-10 70.1 116 42.2
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 1.4e-10 70.1 95 46.3
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.8e-10 69.7 47 68.1
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 1.8e-10 69.7 47 68.1
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 2.3e-10 69.3 69 56.5
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 4.0e-10 68.6 106 43.4
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 4.0e-10 68.6 75 54.7
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 4.0e-10 68.6 79 51.9
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 8.8e-10 67.4 104 48.1
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 8.8e-10 67.4 104 48.1
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 8.8e-10 67.4 104 48.1
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 8.8e-10 67.4 46 73.9
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 1.2e-09 67.0 103 45.6
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 1.2e-09 67.0 71 53.5
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.2e-09 67.0 62 67.7
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 1.5e-09 66.6 68 51.5
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.5e-09 66.6 60 61.7
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.5e-09 66.6 42 73.8
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.0e-09 66.2 104 39.4
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 2.6e-09 65.9 93 39.8
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 3.4e-09 65.5 100 46.0
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 7.5e-09 64.3 116 39.7
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 1.3e-08 63.5 59 52.5
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 1.3e-08 63.5 65 50.8
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 2.2e-08 62.8 62 54.8
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 2.2e-08 62.8 70 55.7
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 2.8e-08 62.4 116 38.8
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 2.8e-08 62.4 118 39.8
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 6.3e-08 61.2 71 43.7
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 8.3e-08 60.8 99 47.5
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.4e-07 60.1 62 54.8
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.4e-07 60.1 62 54.8
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.4e-07 60.1 62 54.8
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 1.8e-07 59.7 62 64.5
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 1.8e-07 59.7 68 61.8
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.8e-07 59.7 73 54.8
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 1.8e-07 59.7 46 65.2
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 2.4e-07 59.3 68 61.8
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 2.4e-07 59.3 68 61.8
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 2.4e-07 59.3 68 61.8
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.4e-07 59.3 40 75.0
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 3.1e-07 58.9 98 50.0
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 4.1e-07 58.5 76 46.1
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 5.4e-07 58.2 96 51.0
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 9.2e-07 57.4 62 61.3
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 9.2e-07 57.4 61 47.5
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 1.2e-06 57.0 68 61.8
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 1.2e-06 57.0 98 49.0
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 1.6e-06 56.6 68 60.3
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 2.0e-06 56.2 76 53.9
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 3.5e-06 55.5 54 53.7
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 3.5e-06 55.5 69 55.1
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 7.7e-06 54.3 67 56.7
Oeu006910.1 Olea europaea HOM05D007325 ORTHO05D009251 7.7e-06 54.3 54 55.6


User provided reference genes

Program Settings