Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G000232 Populus trichocarpa HOM05D003267 ORTHO05D003955 6.6e-28 126.7 67 100.0
Potri.005G000600 Populus trichocarpa HOM05D003267 ORTHO05D003955 8.7e-20 99.8 65 83.1
Sabra05G0013400 Salix brachista HOM05D003267 ORTHO05D003955 8.7e-20 99.8 65 83.1
ClCG02G014560 Citrullus lanatus HOM05D003267 ORTHO05D003955 1.1e-17 92.8 64 78.1
MELO3C004140.2 Cucumis melo HOM05D003267 ORTHO05D003955 1.1e-17 92.8 64 78.1
CsaV3_2G007450 Cucumis sativus L. HOM05D003267 ORTHO05D003955 1.8e-17 92.0 64 78.1
Sed0000167 Sechium edule HOM05D003267 ORTHO05D003955 5.3e-17 90.5 64 76.6
CANSAT54G1010 Cannabis sativa HOM05D003267 ORTHO05D003955 6.9e-17 90.1 64 75.0
MD04G1183500 Malus domestica HOM05D003267 ORTHO05D003955 1.2e-16 89.4 64 76.6
MD12G1196900 Malus domestica HOM05D003267 ORTHO05D003955 1.5e-16 89.0 64 75.0
Eucgr.B01358 Eucalyptus grandis HOM05D003267 ORTHO05D003955 2.0e-16 88.6 64 75.0
AL6G38390 Arabidopsis lyrata HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
AT5G26740 Arabidopsis thaliana HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
BcaNung02822 Brassica carinata HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
BcaNung03960 Brassica carinata HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
A06p36810 Brassica napus HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
C07p41680 Brassica napus HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
BolC7t44703H Brassica oleracea HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
BraA06t26607Z Brassica rapa HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
Carub.0006s2419 Capsella rubella HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
Sp2g21400 Schrenkiella parvula HOM05D003267 ORTHO05D003955 2.6e-16 88.2 64 71.9
Manes.08G105800 Manihot esculenta HOM05D003267 ORTHO05D003955 3.4e-16 87.8 64 73.4
CARHR186990 Cardamine hirsuta HOM05D003267 ORTHO05D003955 4.5e-16 87.4 64 71.9
Thhalv10004284m.g Eutrema salsugineum HOM05D003267 ORTHO05D003955 4.5e-16 87.4 64 71.9
Cfa004400 Carpinus fangiana HOM05D003267 ORTHO05D003955 9.9e-16 86.3 64 71.9
BcaB07g29962 Brassica carinata HOM05D003267 ORTHO05D003955 1.7e-15 85.5 64 68.8
BcaC03g17868 Brassica carinata HOM05D003267 ORTHO05D003955 1.7e-15 85.5 64 68.8
A02p39360 Brassica napus HOM05D003267 ORTHO05D003955 1.7e-15 85.5 64 68.8
C02p59090 Brassica napus HOM05D003267 ORTHO05D003955 1.7e-15 85.5 64 68.8
BolC2t11964H Brassica oleracea HOM05D003267 ORTHO05D003955 1.7e-15 85.5 64 68.8
BraA02t08901Z Brassica rapa HOM05D003267 ORTHO05D003955 1.7e-15 85.5 64 68.8
FvH4_6g08800 Fragaria vesca HOM05D003267 ORTHO05D003955 1.7e-15 85.5 64 70.3
TPR.G8397 Trifolium pratense HOM05D003267 ORTHO05D003955 1.7e-15 85.5 61 72.1
Medtr7g111160 Medicago truncatula HOM05D003267 ORTHO05D003955 2.2e-15 85.1 61 75.4
AL3G16730 Arabidopsis lyrata HOM05D003267 ORTHO05D003955 2.9e-15 84.7 64 68.8
Prupe.6G302000 Prunus persica HOM05D003267 ORTHO05D003955 2.9e-15 84.7 64 70.3
THA.LOC104802767 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 2.9e-15 84.7 64 70.3
TAR365G0992 Trochodendron aralioides HOM05D003267 ORTHO05D003955 2.9e-15 84.7 61 77.0
AT3G05940 Arabidopsis thaliana HOM05D003267 ORTHO05D003955 3.8e-15 84.3 64 68.8
Carub.0003s0534 Capsella rubella HOM05D003267 ORTHO05D003955 3.8e-15 84.3 64 68.8
CARHR080430 Cardamine hirsuta HOM05D003267 ORTHO05D003955 3.8e-15 84.3 64 68.8
Thhalv10020796m.g Eutrema salsugineum HOM05D003267 ORTHO05D003955 3.8e-15 84.3 64 68.8
Sp3g04860 Schrenkiella parvula HOM05D003267 ORTHO05D003955 3.8e-15 84.3 64 68.8
TWI12G0658 Tripterygium wilfordii HOM05D003267 ORTHO05D003955 3.8e-15 84.3 61 72.1
Aa31LG11G10050 Aethionema arabicum HOM05D003267 ORTHO05D003955 4.9e-15 84.0 64 68.8
Cpa.g.sc19.30 Carica papaya HOM05D003267 ORTHO05D003955 4.9e-15 84.0 64 67.2
RcHm_v2.0_Chr3g0459061 Rosa chinensis HOM05D003267 ORTHO05D003955 4.9e-15 84.0 62 71.0
CiPaw.02G000200 Carya illinoinensis HOM05D003267 ORTHO05D003955 6.4e-15 83.6 64 71.9
Lj1g0010587 Lotus japonicus HOM05D003267 ORTHO05D003955 6.4e-15 83.6 64 68.8
MBI18_g28943_MAGBIO Magnolia biondii HOM05D003267 ORTHO05D003955 6.4e-15 83.6 62 74.2
Sed0022970 Sechium edule HOM05D003267 ORTHO05D003955 6.4e-15 83.6 61 72.1
Lalb_Chr06g0167191 Lupinus albus HOM05D003267 ORTHO05D003955 1.4e-14 82.4 63 66.7
THA.LOC104818769 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 1.4e-14 82.4 64 67.2
Aa31LG5G16380 Aethionema arabicum HOM05D003267 ORTHO05D003955 1.9e-14 82.0 64 64.1
COL.COLO4_05471 Corchorus olitorius HOM05D003267 ORTHO05D003955 1.9e-14 82.0 64 68.8
CDE05G1830 Ceratophyllum demersum HOM05D003267 ORTHO05D003955 3.2e-14 81.3 58 75.9
CDE11G0971 Ceratophyllum demersum HOM05D003267 ORTHO05D003955 3.2e-14 81.3 58 75.9
Gohir.A11G275900 Gossypium hirsutum HOM05D003267 ORTHO05D003955 3.2e-14 81.3 64 68.8
Glyma.03G226700 Glycine max HOM05D003267 ORTHO05D003955 4.2e-14 80.9 61 68.9
Gohir.D11G286300 Gossypium hirsutum HOM05D003267 ORTHO05D003955 4.2e-14 80.9 64 67.2
Gorai.007G309700 Gossypium raimondii HOM05D003267 ORTHO05D003955 4.2e-14 80.9 64 67.2
Lj5g0007569 Lotus japonicus HOM05D003267 ORTHO05D003955 4.2e-14 80.9 64 65.6
Psat0s4029g0080 Pisum sativum HOM05D003267 ORTHO05D003955 4.2e-14 80.9 61 70.5
Sc23g0003840 Simmondsia chinensis HOM05D003267 ORTHO05D003955 4.2e-14 80.9 61 70.5
A05p42110 Brassica napus HOM05D003267 ORTHO05D003955 5.5e-14 80.5 62 67.7
BraA05t22929Z Brassica rapa HOM05D003267 ORTHO05D003955 5.5e-14 80.5 62 67.7
Phvul.001G220600 Phaseolus vulgaris HOM05D003267 ORTHO05D003955 5.5e-14 80.5 61 70.5
QL03p011428 Quercus lobata HOM05D003267 ORTHO05D003955 5.5e-14 80.5 64 67.2
Atru.chr12.1498 Acer truncatum HOM05D003267 ORTHO05D003955 7.1e-14 80.1 59 74.6
BcaC05g30076 Brassica carinata HOM05D003267 ORTHO05D003955 7.1e-14 80.1 62 66.1
BolC5t34791H Brassica oleracea HOM05D003267 ORTHO05D003955 7.1e-14 80.1 62 66.1
ECA236G4154 Erigeron canadensis HOM05D003267 ORTHO05D003955 7.1e-14 80.1 60 71.7
PGR119G1814 Punica granatum HOM05D003267 ORTHO05D003955 7.1e-14 80.1 64 71.9
Ca_09264_v3 Cicer arietinum L. HOM05D003267 ORTHO05D003955 9.3e-14 79.7 61 67.2
Ciclev10028530m.g Citrus clementina HOM05D003267 ORTHO05D003955 9.3e-14 79.7 63 66.7
Hma1.2p1_0052F.1_g030220 Hydrangea macrophylla HOM05D003267 ORTHO05D003955 9.3e-14 79.7 65 63.1
Hma1.2p1_0157F.1_g069480 Hydrangea macrophylla HOM05D003267 ORTHO05D003955 9.3e-14 79.7 61 72.1
Lj5C313G5 Lonicera japonica HOM05D003267 ORTHO05D003955 9.3e-14 79.7 60 70.0
Thecc.05G331700 Theobroma cacao HOM05D003267 ORTHO05D003955 9.3e-14 79.7 64 68.8
arahy.Tifrunner.gnm1.ann1.RKP3NC Arachis hypogaea HOM05D003267 ORTHO05D003955 1.2e-13 79.3 49 75.5
arahy.Tifrunner.gnm1.ann1.X4I5LU Arachis hypogaea HOM05D003267 ORTHO05D003955 1.2e-13 79.3 49 75.5
Cc02_g36900 Coffea canephora HOM05D003267 ORTHO05D003955 1.2e-13 79.3 59 72.9
Duzib128G1544 Durio zibethinus HOM05D003267 ORTHO05D003955 1.2e-13 79.3 61 70.5
Nn4g25260 Nelumbo nucifera HOM05D003267 ORTHO05D003955 1.2e-13 79.3 61 70.5
Glyma.19G223700 Glycine max HOM05D003267 ORTHO05D003955 1.6e-13 79.0 61 68.9
MBI18_g03886_MAGBIO Magnolia biondii HOM05D003267 ORTHO05D003955 1.6e-13 79.0 61 68.9
C05p61320 Brassica napus HOM05D003267 ORTHO05D003955 2.1e-13 78.6 62 64.5
DCAR_001878 Daucus carota HOM05D003267 ORTHO05D003955 2.1e-13 78.6 58 72.4
Lalb_Chr07g0193041 Lupinus albus HOM05D003267 ORTHO05D003955 2.1e-13 78.6 61 70.5
VMungo1383G0366 Vigna mungo HOM05D003267 ORTHO05D003955 2.1e-13 78.6 61 67.2
MSTRG.5177 Avicennia marina HOM05D003267 ORTHO05D003955 2.7e-13 78.2 59 72.9
Lsat_1_v5_gn_9_84121 Lactuca sativa HOM05D003267 ORTHO05D003955 2.7e-13 78.2 60 68.3
Duzib177G0095 Durio zibethinus HOM05D003267 ORTHO05D003955 3.5e-13 77.8 64 67.2
Lsat_1_v5_gn_5_101860 Lactuca sativa HOM05D003267 ORTHO05D003955 3.5e-13 77.8 60 68.3
PGR031G3159 Punica granatum HOM05D003267 ORTHO05D003955 3.5e-13 77.8 64 65.6
Hund12702 Selenicereus undatus HOM05D003267 ORTHO05D003955 3.5e-13 77.8 49 73.5
Actinidia17726 Actinidia chinensis HOM05D003267 ORTHO05D003955 4.6e-13 77.4 61 68.9
Actinidia22843 Actinidia chinensis HOM05D003267 ORTHO05D003955 4.6e-13 77.4 61 68.9
Oeu006062.1 Olea europaea HOM05D003267 ORTHO05D003955 4.6e-13 77.4 59 72.9
Peaxi162Scf00071g00134 Petunia axillaris HOM05D003267 ORTHO05D003955 4.6e-13 77.4 59 69.5
Rhsim05G0117100 Rhododendron simsii HOM05D003267 ORTHO05D003955 4.6e-13 77.4 50 72.0
Hund04395 Selenicereus undatus HOM05D003267 ORTHO05D003955 4.6e-13 77.4 50 72.0
arahy.Tifrunner.gnm1.ann1.23D8N6 Arachis hypogaea HOM05D003267 ORTHO05D003955 6.0e-13 77.0 61 68.9
arahy.Tifrunner.gnm1.ann1.X07PWR Arachis hypogaea HOM05D003267 ORTHO05D003955 6.0e-13 77.0 61 68.9
EL10Ac6g15325 Beta vulgaris HOM05D003267 ORTHO05D003955 6.0e-13 77.0 63 65.1
CSS0001783 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 6.0e-13 77.0 61 68.9
CSS0029776 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 6.0e-13 77.0 61 68.9
HanXRQChr10g0293521 Helianthus annuus HOM05D003267 ORTHO05D003955 6.0e-13 77.0 60 66.7
Aqoxy5G02882 Aquilegia oxysepala HOM05D003267 ORTHO05D003955 7.9e-13 76.6 61 68.9
CSS0009396 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 7.9e-13 76.6 61 68.9
CSS0023239 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 7.9e-13 76.6 61 68.9
Migut.N00992 Erythranthe guttata HOM05D003267 ORTHO05D003955 7.9e-13 76.6 59 71.2
HanXRQChr16g0518801 Helianthus annuus HOM05D003267 ORTHO05D003955 7.9e-13 76.6 62 67.7
SGA_v2.0_scaffold131G34450 Striga asiatica HOM05D003267 ORTHO05D003955 7.9e-13 76.6 59 71.2
AUR62003552 Chenopodium quinoa HOM05D003267 ORTHO05D003955 1.0e-12 76.3 58 70.7
AUR62017866 Chenopodium quinoa HOM05D003267 ORTHO05D003955 1.0e-12 76.3 58 70.7
Nitab4.5_0004889g0020 Nicotiana tabacum HOM05D003267 ORTHO05D003955 1.0e-12 76.3 61 68.9
HanXRQChr07g0193681 Helianthus annuus HOM05D003267 ORTHO05D003955 1.3e-12 75.9 60 70.0
Rhsim11G0111200 Rhododendron simsii HOM05D003267 ORTHO05D003955 1.3e-12 75.9 61 68.9
Solyc01g102480.3 Solanum lycopersicum HOM05D003267 ORTHO05D003955 1.3e-12 75.9 52 71.2
Sopen01g044920 Solanum pennellii HOM05D003267 ORTHO05D003955 1.3e-12 75.9 52 71.2
ECA234G4544 Erigeron canadensis HOM05D006915 ORTHO05D003955 1.8e-12 75.5 60 63.3
Lj9A239T58 Lonicera japonica HOM05D003267 ORTHO05D003955 1.8e-12 75.5 60 65.0
SGA_v2.0_scaffold311G48247 Striga asiatica HOM05D003267 ORTHO05D003955 1.8e-12 75.5 59 71.2
THA.LOC104822291 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 1.8e-12 75.5 58 69.0
Nitab4.5_0004090g0130 Nicotiana tabacum HOM05D003267 ORTHO05D003955 2.3e-12 75.1 61 68.9
PSO761G0395 Papaver somniferum HOM05D003267 ORTHO05D003955 2.3e-12 75.1 61 68.9
Hund23017 Selenicereus undatus HOM05D003267 ORTHO05D003955 2.3e-12 75.1 61 67.2
vmacro01648 Vaccinium macrocarpon HOM05D003267 ORTHO05D003955 2.3e-12 75.1 49 73.5
Glyma.20G089700 Glycine max HOM05D003267 ORTHO05D003955 3.0e-12 74.7 61 62.3
Oeu033227.1 Olea europaea HOM05D003267 ORTHO05D003955 3.0e-12 74.7 59 66.1
PSO210G5864 Papaver somniferum HOM05D003267 ORTHO05D003955 3.0e-12 74.7 61 68.9
MSTRG.20347 Avicennia marina HOM05D003267 ORTHO05D003955 3.9e-12 74.3 59 69.5
CAN.G1379.38 Capsicum annuum HOM05D003267 ORTHO05D003955 3.9e-12 74.3 61 68.9
Peaxi162Scf00194g00520 Petunia axillaris HOM05D003267 ORTHO05D003955 3.9e-12 74.3 61 68.9
PGSC0003DMG400018231 Solanum tuberosum HOM05D003267 ORTHO05D003955 6.7e-12 73.6 61 67.2
Phvul.007G207100 Phaseolus vulgaris HOM05D003267 ORTHO05D003955 8.7e-12 73.2 61 62.3
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 8.7e-12 73.2 61 62.3
MSTRG.27901 Avicennia marina HOM05D003267 ORTHO05D003955 1.1e-11 72.8 59 69.5
Eucgr.H01351 Eucalyptus grandis HOM05D003267 ORTHO05D003955 1.5e-11 72.4 64 60.9
Ah.03g147760 Amaranthus hybridus HOM05D003267 ORTHO05D003955 1.9e-11 72.0 46 76.1
SEGI_26227 Sequoiadendron giganteum HOM05D003267 ORTHO05D003955 1.9e-11 72.0 58 62.1
DCAR_003255 Daucus carota HOM05D003267 ORTHO05D003955 3.3e-11 71.2 58 69.0
Migut.B00681 Erythranthe guttata HOM05D003267 ORTHO05D003955 4.3e-11 70.9 61 63.9
Glyma.10G141000 Glycine max HOM05D003267 ORTHO05D003955 5.6e-11 70.5 60 61.7
Ah.02g121340 Amaranthus hybridus HOM05D003267 ORTHO05D003955 9.6e-11 69.7 59 61.0
DCAR_022330 Daucus carota HOM05D003267 ORTHO05D003955 9.6e-11 69.7 58 65.5
SHI18005 Sapria himalayana HOM05D003267 ORTHO05D003955 1.3e-10 69.3 58 67.2
SEGI_24145 Sequoiadendron giganteum HOM05D003267 ORTHO05D003955 6.9e-09 63.5 46 65.2
Mapoly0177s0009 Marchantia polymorpha HOM05D003267 ORTHO05D003955 1.0e-07 59.7 58 55.2
Pp3c11_20710 Physcomitrium patens HOM05D003267 ORTHO05D003955 1.0e-07 59.7 54 57.4
Pp3c7_6310 Physcomitrium patens HOM05D003267 ORTHO05D003955 1.3e-07 59.3 65 55.4
SMO334G0078 Selaginella moellendorffii HOM05D003267 ORTHO05D003955 1.7e-07 58.9 49 63.3
Pp3c1_20320 Physcomitrium patens HOM05D003267 ORTHO05D003955 8.4e-07 56.6 49 59.2
unitig_26.g9012 Utricularia gibba HOM05D003267 ORTHO05D003955 8.4e-07 56.6 42 76.2
SMO365G0052 Selaginella moellendorffii HOM05D003267 ORTHO05D003955 1.1e-06 56.2 54 55.6
ATR0693G156 Amborella trichopoda HOM05D003267 ORTHO05D003955 2.5e-06 55.1 40 72.5
Os03g0827600 Oryza sativa ssp. japonica HOM05D003267 ORTHO05D003955 7.1e-06 53.5 56 51.8


User provided reference genes

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