Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G235300 Populus trichocarpa HOM05D007367 ORTHO05D008866 4.6e-90 334.7 190 100.0
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 1.5e-69 266.5 190 79.5
Ciclev10012881m.g Citrus clementina HOM05D007367 ORTHO05D008866 1.0e-49 200.7 165 65.5
Duzib068G0439 Durio zibethinus HOM05D007367 ORTHO05D008866 2.5e-48 196.1 158 68.4
Manes.10G067900 Manihot esculenta HOM05D007367 ORTHO05D008866 2.5e-48 196.1 165 64.8
Cfa012305 Carpinus fangiana HOM05D007367 ORTHO05D008866 1.6e-47 193.4 165 63.0
CiPaw.11G074200 Carya illinoinensis HOM05D007367 ORTHO05D008866 2.1e-47 193.0 164 62.8
GSVIVG01036886001 Vitis vinifera HOM05D007367 ORTHO05D008866 2.1e-47 193.0 163 65.0
COL.COLO4_16748 Corchorus olitorius HOM05D007367 ORTHO05D008866 1.8e-46 189.9 159 62.9
Gohir.D12G204000 Gossypium hirsutum HOM05D007367 ORTHO05D008866 2.4e-46 189.5 172 61.0
Prupe.5G013300 Prunus persica HOM05D007367 ORTHO05D008866 2.4e-46 189.5 158 63.3
Actinidia32792 Actinidia chinensis HOM05D007367 ORTHO05D008866 3.1e-46 189.1 162 61.1
TWI38G0281 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 3.1e-46 189.1 164 64.0
Thecc.03G320300 Theobroma cacao HOM05D007367 ORTHO05D008866 9.0e-46 187.6 162 64.8
RcHm_v2.0_Chr7g0215331 Rosa chinensis HOM05D007367 ORTHO05D008866 5.8e-45 184.9 170 60.6
ClCG07G011120 Citrullus lanatus HOM05D007367 ORTHO05D008866 7.6e-45 184.5 161 60.2
Gohir.A12G201200 Gossypium hirsutum HOM05D007367 ORTHO05D008866 7.6e-45 184.5 172 59.9
QL12p003620 Quercus lobata HOM05D007367 ORTHO05D008866 3.8e-44 182.2 163 58.3
QL93p0143_0020 Quercus lobata HOM05D007367 ORTHO05D008866 3.8e-44 182.2 163 58.3
Gorai.008G218800 Gossypium raimondii HOM05D007367 ORTHO05D008866 6.4e-44 181.4 152 65.8
Glyma.02G045600 Glycine max HOM05D007367 ORTHO05D008866 1.4e-43 180.3 165 58.8
MELO3C016218.2 Cucumis melo HOM05D007367 ORTHO05D008866 1.9e-43 179.9 159 58.5
TWI38G2056 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 2.4e-43 179.5 163 62.0
Lj4g0011102 Lotus japonicus HOM05D007367 ORTHO05D008866 3.2e-43 179.1 166 56.6
Glyma.16G123600 Glycine max HOM05D007367 ORTHO05D008866 4.2e-43 178.7 165 57.6
THA.LOC104811080 Tarenaya hassleriana HOM05D007367 ORTHO05D008866 4.2e-43 178.7 162 58.6
MD03G1130300 Malus domestica HOM05D007367 ORTHO05D008866 1.2e-42 177.2 158 59.5
FvH4_5g25140 Fragaria vesca HOM05D007367 ORTHO05D008866 1.6e-42 176.8 165 57.0
Dinv37431 Davidia involucrata HOM05D007367 ORTHO05D008866 2.1e-42 176.4 160 61.2
Medtr8g075140 Medicago truncatula HOM05D007367 ORTHO05D008866 2.1e-42 176.4 162 57.4
Cc08_g05930 Coffea canephora HOM05D007367 ORTHO05D008866 3.0e-41 172.6 162 58.6
FAN13G0070 Fragaria x ananassa HOM05D007367 ORTHO05D008866 3.9e-41 172.2 165 56.4
arahy.Tifrunner.gnm1.ann1.H9MF1T Arachis hypogaea HOM05D007367 ORTHO05D008866 5.1e-41 171.8 156 55.8
CANSAT01G1692 Cannabis sativa HOM05D007367 ORTHO05D008866 6.7e-41 171.4 158 56.3
Solyc12g096170.2 Solanum lycopersicum HOM05D007367 ORTHO05D008866 1.1e-40 170.6 164 57.3
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 1.1e-40 170.6 164 57.3
FAN08G2564 Fragaria x ananassa HOM05D007367 ORTHO05D008866 1.5e-40 170.2 165 55.2
Sed0007825 Sechium edule HOM05D007367 ORTHO05D008866 1.9e-40 169.9 165 55.8
TPR.G19504 Trifolium pratense HOM05D007367 ORTHO05D008866 2.5e-40 169.5 161 56.5
Sc07g0008020 Simmondsia chinensis HOM05D007367 ORTHO05D008866 3.3e-40 169.1 157 54.8
TAR374G1177 Trochodendron aralioides HOM05D007367 ORTHO05D008866 3.3e-40 169.1 135 64.4
Carub.0007s2188 Capsella rubella HOM05D007367 ORTHO05D008866 7.4e-40 167.9 157 58.0
CARHR226150 Cardamine hirsuta HOM05D007367 ORTHO05D008866 7.4e-40 167.9 157 54.8
Sp7g17960 Schrenkiella parvula HOM05D007367 ORTHO05D008866 9.6e-40 167.5 157 54.8
Lalb_Chr16g0391641 Lupinus albus HOM05D007367 ORTHO05D008866 2.8e-39 166.0 162 54.9
CsaV3_4G007130 Cucumis sativus L. HOM05D007367 ORTHO05D008866 3.7e-39 165.6 154 56.5
VMungo0251G1728 Vigna mungo HOM05D007367 ORTHO05D008866 3.7e-39 165.6 159 54.7
Atru.chr8.2637 Acer truncatum HOM05D007367 ORTHO05D008866 6.2e-39 164.9 164 56.1
Aa31LG6G1950 Aethionema arabicum HOM05D007367 ORTHO05D008866 6.2e-39 164.9 162 55.6
Phvul.003G266000 Phaseolus vulgaris HOM05D007367 ORTHO05D008866 5.3e-38 161.8 173 52.0
Nn1g01985 Nelumbo nucifera HOM05D007367 ORTHO05D008866 2.6e-37 159.5 158 55.1
Peaxi162Scf00876g00431 Petunia axillaris HOM05D007367 ORTHO05D008866 2.6e-37 159.5 168 53.0
SalBow4G0967 Salvia bowleyana HOM05D007367 ORTHO05D008866 5.8e-37 158.3 159 52.2
arahy.Tifrunner.gnm1.ann1.I4PABW Arachis hypogaea HOM05D007367 ORTHO05D008866 1.7e-36 156.8 184 47.3
ECA246G3716 Erigeron canadensis HOM05D007367 ORTHO05D008866 2.2e-36 156.4 155 54.2
Migut.A00520 Erythranthe guttata HOM05D007367 ORTHO05D008866 6.5e-36 154.8 152 52.0
SGA_v2.0_scaffold89G27372 Striga asiatica HOM05D007367 ORTHO05D008866 1.1e-35 154.1 157 52.2
Lsat_1_v5_gn_5_43721 Lactuca sativa HOM05D007367 ORTHO05D008866 1.4e-35 153.7 149 55.0
Psat4g102200 Pisum sativum HOM05D007367 ORTHO05D008866 1.4e-35 153.7 158 50.6
MSTRG.25748 Avicennia marina HOM05D007367 ORTHO05D008866 1.9e-35 153.3 159 52.8
CAN.G947.33 Capsicum annuum HOM05D007367 ORTHO05D008866 2.5e-35 152.9 149 56.4
AL7G34810 Arabidopsis lyrata HOM05D007367 ORTHO05D008866 4.2e-35 152.1 155 52.9
HanXRQChr02g0034081 Helianthus annuus HOM05D007367 ORTHO05D008866 3.5e-34 149.1 148 54.7
AT4G19350 Arabidopsis thaliana HOM05D007367 ORTHO05D008866 6.0e-34 148.3 160 50.6
CDE02G0575 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 1.0e-33 147.5 157 51.0
FAN18G1407 Fragaria x ananassa HOM05D007367 ORTHO05D008866 1.8e-33 146.7 165 50.9
BcaNung01789 Brassica carinata HOM05D007367 ORTHO05D008866 2.3e-33 146.4 157 48.4
FAN04G0859 Fragaria x ananassa HOM05D007367 ORTHO05D008866 5.1e-33 145.2 165 50.9
BcaC09g51422 Brassica carinata HOM05D007367 ORTHO05D008866 8.7e-33 144.4 158 48.7
C01p13270 Brassica napus HOM05D007367 ORTHO05D008866 1.1e-32 144.1 158 48.7
BolC1t01302H Brassica oleracea HOM05D007367 ORTHO05D008866 5.7e-32 141.7 158 47.5
A01p11220 Brassica napus HOM05D007367 ORTHO05D008866 9.6e-32 141.0 158 46.8
PGR042G2818 Punica granatum HOM05D007367 ORTHO05D008866 1.3e-31 140.6 149 51.7
Aqoxy7G01946 Aquilegia oxysepala HOM05D000773 ORTHO05D008866 2.8e-31 139.4 149 47.0
EL10Ac8g19394 Beta vulgaris HOM05D007367 ORTHO05D008866 8.2e-31 137.9 164 43.9
BraA01t01068Z Brassica rapa HOM05D007367 ORTHO05D008866 8.2e-31 137.9 158 45.6
PGSC0003DMG400029288 Solanum tuberosum HOM05D007367 ORTHO05D008866 1.4e-30 137.1 177 47.5
vmacro00097 Vaccinium macrocarpon HOM05D007367 ORTHO05D008866 2.6e-29 132.9 219 38.8
Os08g0162500 Oryza sativa ssp. japonica HOM05D007367 ORTHO05D008866 5.9e-29 131.7 154 46.8
unitig_748.g8147 Utricularia gibba HOM05D007367 ORTHO05D008866 2.9e-28 129.4 169 43.8
Zm00001eb415480 Zea mays HOM05D007367 ORTHO05D008866 2.1e-26 123.2 138 47.8
PSO063G4690 Papaver somniferum HOM05D007367 ORTHO05D008866 7.9e-26 121.3 141 46.1
DCAR_002187 Daucus carota HOM05D007367 ORTHO05D008866 6.7e-25 118.2 95 67.4
CDE11G0580 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 2.5e-24 116.3 129 50.4
PSO675G5685 Papaver somniferum HOM05D007367 ORTHO05D008866 1.6e-23 113.6 118 49.2
HPP92_022724 Vanilla planifolia HOM05D007367 ORTHO05D008866 2.2e-23 113.2 160 36.9
Ah.09g231810 Amaranthus hybridus HOM05D007367 ORTHO05D008866 1.2e-21 107.5 164 39.0
Nitab4.5_0011129g0040 Nicotiana tabacum HOM05D007367 ORTHO05D008866 1.2e-21 107.5 124 51.6
Thecc.04G178000 Theobroma cacao HOM05D000090 ORTHO05D001322 1.4e-19 100.5 119 52.1
Haze_08425 Corylus avellana HOM05D007367 ORTHO05D008866 5.5e-19 98.6 106 54.7
AUR62030407 Chenopodium quinoa HOM05D007367 ORTHO05D008866 1.6e-18 97.1 167 36.5
Thhalv10026808m.g Eutrema salsugineum HOM05D007367 ORTHO05D008866 3.6e-18 95.9 101 48.5
Oeu046776.1 Olea europaea HOM05D007367 ORTHO05D008866 6.7e-17 91.7 88 55.7
Hund14309 Selenicereus undatus HOM05D007367 ORTHO05D008866 6.7e-17 91.7 106 48.1
Nitab4.5_0001913g0180 Nicotiana tabacum HOM05D007367 ORTHO05D008866 2.2e-15 86.7 115 47.0
Eucgr.E01150 Eucalyptus grandis HOM05D007367 ORTHO05D008866 8.5e-12 74.7 95 43.2
Atru.chr8.2641 Acer truncatum HOM05D007367 ORTHO05D008866 9.4e-11 71.2 112 43.8
Actinidia01248 Actinidia chinensis HOM05D007367 ORTHO05D008866 9.4e-11 71.2 84 50.0
Cpa.g.sc103.6 Carica papaya HOM05D007367 ORTHO05D008866 2.1e-10 70.1 75 53.3
SEGI_16341 Sequoiadendron giganteum HOM05D007367 ORTHO05D008866 3.6e-10 69.3 102 39.2
SHI32769 Sapria himalayana HOM05D000002 ORTHO05D000001 6.7e-09 65.1 60 56.7
Gohir.A08G148800 Gossypium hirsutum HOM05D036757 ORTHO05D048069 1.5e-08 63.9 102 46.1
Pp3c23_7640 Physcomitrium patens HOM05D007367 ORTHO05D008866 4.8e-07 58.9 151 28.5
Oeu046774.1 Olea europaea HOM05D007367 ORTHO05D008866 1.4e-06 57.4 47 61.7
DCAR_002186 Daucus carota HOM05D007367 ORTHO05D008866 5.3e-06 55.5 70 42.9
Gorai.004G177100 Gossypium raimondii HOM05D036757 ORTHO05D048069 7.0e-06 55.1 120 39.2


User provided reference genes

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