Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 1.5e-170 602.8 310 100.0
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 3.1e-144 515.4 388 74.5
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 9.9e-119 430.6 310 73.5
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 3.8e-118 428.7 315 73.3
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 3.9e-115 418.7 301 74.4
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 8.7e-115 417.5 295 74.2
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 5.6e-114 414.8 285 76.8
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 1.3e-113 413.7 300 73.7
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 1.3e-113 413.7 298 73.2
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 2.1e-113 412.9 305 72.1
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 2.8e-113 412.5 298 73.5
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 4.8e-113 411.8 297 73.1
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 6.2e-113 411.4 298 74.8
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.1e-112 410.6 308 71.4
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 1.8e-112 409.8 284 76.4
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 9.0e-112 407.5 285 74.7
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 2.0e-111 406.4 306 71.9
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 4.5e-111 405.2 298 72.5
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 7.6e-111 404.4 282 76.2
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 7.6e-111 404.4 263 78.3
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 1.0e-110 404.1 227 88.5
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 1.0e-110 404.1 299 73.2
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 1.3e-110 403.7 307 71.3
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.7e-110 403.3 228 88.2
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.7e-110 403.3 228 88.2
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 2.9e-110 402.5 287 74.6
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 2.9e-110 402.5 287 74.6
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 3.8e-110 402.1 226 87.2
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 4.9e-110 401.7 228 88.2
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 6.5e-110 401.4 239 85.8
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 8.4e-110 401.0 282 75.2
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 1.9e-109 399.8 239 82.8
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 1.9e-109 399.8 317 69.1
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 1.9e-109 399.8 285 73.0
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 2.5e-109 399.4 307 70.4
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 5.5e-109 398.3 303 71.3
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 9.3e-109 397.5 313 69.0
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.2e-108 397.1 292 71.6
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 1.6e-108 396.7 260 78.1
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 4.6e-108 395.2 280 74.6
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 6.0e-108 394.8 233 83.3
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 7.9e-108 394.4 290 71.0
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.3e-107 393.7 241 82.2
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 1.8e-107 393.3 296 71.3
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 2.3e-107 392.9 314 69.1
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 2.3e-107 392.9 292 70.9
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 3.0e-107 392.5 256 81.2
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 8.7e-107 391.0 277 71.8
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 1.5e-106 390.2 230 85.2
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 1.9e-106 389.8 230 84.8
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 2.5e-106 389.4 299 69.6
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 4.3e-106 388.7 241 80.1
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 5.7e-106 388.3 241 80.1
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 5.7e-106 388.3 300 70.3
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 9.7e-106 387.5 241 79.7
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 9.7e-106 387.5 241 79.7
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.3e-105 387.1 241 79.7
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 1.6e-105 386.7 241 79.7
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 1.6e-105 386.7 241 80.1
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 2.2e-105 386.3 231 83.1
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 8.2e-105 384.4 241 79.7
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 1.1e-104 384.0 230 83.9
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 1.1e-104 384.0 236 81.4
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.4e-104 383.6 308 67.2
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 2.4e-104 382.9 308 67.5
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 2.4e-104 382.9 273 73.6
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 3.1e-104 382.5 297 68.4
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 4.1e-104 382.1 223 85.7
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 5.3e-104 381.7 248 77.8
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 1.5e-103 380.2 244 78.7
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 2.6e-103 379.4 253 76.3
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 4.5e-103 378.6 226 83.2
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 7.6e-103 377.9 254 75.6
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.2e-102 376.3 235 78.7
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.9e-102 375.9 307 66.1
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 3.8e-102 375.6 293 67.2
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 3.8e-102 375.6 229 80.3
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 1.9e-101 373.2 312 66.3
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 5.5e-101 371.7 207 89.9
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 8.7e-99 364.4 226 78.3
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.1e-98 364.0 236 78.0
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 5.7e-98 361.7 317 66.2
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 5.7e-98 361.7 226 78.3
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 1.7e-97 360.1 207 87.0
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 8.2e-97 357.8 270 68.9
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 1.1e-96 357.5 215 82.8
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 1.1e-96 357.5 284 69.0
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.8e-96 356.7 308 65.9
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 9.1e-96 354.4 246 75.6
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 2.6e-95 352.8 226 76.5
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 5.9e-95 351.7 387 54.3
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 3.2e-93 345.9 239 74.1
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.2e-92 344.0 243 74.1
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 3.9e-91 339.0 238 75.6
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 8.8e-91 337.8 231 71.9
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.7e-89 333.6 235 71.1
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 4.8e-89 332.0 231 69.7
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 1.1e-88 330.9 299 61.9
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 5.3e-88 328.6 303 63.4
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 1.0e-86 324.3 193 84.5
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 1.4e-83 313.9 275 62.9
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 1.8e-83 313.5 293 63.5
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 3.9e-83 312.4 215 74.0
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 4.4e-82 308.9 251 66.5
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 2.0e-74 283.5 294 57.1
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 4.4e-74 282.3 172 79.7
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 7.5e-74 281.6 229 63.3
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 4.1e-72 275.8 207 72.9
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 1.9e-69 266.9 223 61.4
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 2.6e-66 256.5 202 68.3
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.7e-65 252.7 207 64.3
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 5.0e-54 215.7 171 67.8
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 1.5e-53 214.2 183 56.8
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 3.9e-46 189.5 162 63.6
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.2e-42 177.9 168 58.9
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 4.9e-41 172.6 151 60.3
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 6.4e-41 172.2 129 72.1
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 1.2e-39 167.9 104 78.8
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 2.1e-31 140.6 265 39.6
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 3.0e-30 136.7 260 40.0
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 6.8e-27 125.6 147 49.7
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 2.4e-24 117.1 184 42.9
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 9.2e-24 115.2 144 48.6
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 6.2e-20 102.4 65 72.3
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 6.9e-19 99.0 62 75.8
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 9.0e-19 98.6 239 31.0
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 4.4e-18 96.3 220 30.5
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.7e-17 94.4 99 52.5
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 9.3e-16 88.6 55 76.4
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 6.0e-15 85.9 49 83.7
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.1e-13 81.6 87 59.8
FAN13G2879 Fragaria x ananassa HOM05D005661 ORTHO05D046262 1.9e-08 64.3 191 34.0
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 3.2e-08 63.5 63 60.3


User provided reference genes

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