Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 2186.4 1090 100.0
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 2054.3 1090 94.2
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1824.3 1085 83.1
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1801.9 1084 82.2
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1743.8 1090 79.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1738.0 1087 79.4
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1729.9 1094 78.4
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1728.8 1088 78.9
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1727.6 1089 78.7
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1725.7 1098 77.9
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1725.3 1085 78.4
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1721.4 1091 78.1
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1721.1 1088 78.4
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1719.1 1091 78.2
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1713.7 1087 78.1
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1699.9 1069 78.3
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1695.2 1088 77.5
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1692.9 1101 76.8
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1689.5 1091 76.4
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1689.1 1087 76.7
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1688.3 1086 76.6
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1686.8 1088 75.5
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1678.7 1085 75.9
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1678.7 1093 76.0
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1670.2 1087 75.5
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1669.4 1087 75.2
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1669.1 1089 75.6
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1667.1 1087 75.2
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1089 75.0
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1663.3 1089 75.1
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1660.6 1171 71.8
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1660.2 1088 74.6
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1656.7 1091 74.7
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1655.6 1171 71.8
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1654.4 1105 74.0
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1653.6 1091 74.3
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1652.9 1086 74.3
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1088 74.2
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1652.1 1090 74.1
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1645.9 1091 74.0
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1644.8 1092 73.7
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1644.0 1086 74.4
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1091 74.2
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1640.9 1091 74.0
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1640.6 1094 73.9
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1640.6 1091 74.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1639.0 1116 72.0
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1639.0 1085 73.4
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1632.5 1084 73.2
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1632.5 1084 73.2
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1630.2 1088 73.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1627.5 1091 73.6
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1626.3 1087 73.2
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1625.9 1091 73.4
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1620.9 1090 72.8
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1613.2 1093 72.6
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1608.6 1101 71.9
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1607.8 1087 74.0
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1090 71.9
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1598.9 1088 72.2
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1091 71.8
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1090 72.0
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1091 71.9
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1593.9 1091 71.5
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1091 71.3
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1590.5 1086 71.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1588.9 1087 71.3
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1115 71.2
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1580.5 1067 72.4
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1575.8 1096 71.6
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1575.8 1096 71.7
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1085 71.2
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1097 70.6
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1091 70.9
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1091 70.9
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1085 70.8
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1087 71.2
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1563.5 1091 70.9
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1091 70.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1085 71.2
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1091 70.9
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1561.6 1091 70.7
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1561.6 1091 70.3
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1086 70.7
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1560.4 1091 70.7
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1098 70.4
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1557.0 1085 70.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1556.6 1087 71.0
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1086 70.1
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1091 70.2
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1546.9 1087 71.3
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1546.9 1084 70.9
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1114 68.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1541.6 1023 75.0
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1541.2 1081 70.3
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1539.6 1087 70.3
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1530.0 1086 69.2
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1525.8 1107 70.0
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1525.8 1160 65.4
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1521.5 1106 68.3
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1518.4 1002 76.2
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1516.9 1087 69.0
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1515.7 1002 74.3
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1504.6 1059 70.6
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1476.1 1085 69.6
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1474.1 1113 65.7
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1471.4 1088 66.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1460.3 1088 67.1
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1431.4 982 72.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1413.3 1105 62.4
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1358.6 1086 64.7
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1283.5 791 80.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1166.0 1095 52.7
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1153.3 691 82.5
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1153.3 1087 52.7
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1146.7 1087 52.9
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1132.9 1129 50.8
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1129.4 717 77.7
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 1091 52.4
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1120.5 758 72.7
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1110.5 673 80.4
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.0e-287 993.8 842 57.8
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.7e-274 949.9 612 78.4
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.7e-261 906.7 819 58.6
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.1e-248 863.2 960 46.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 6.8e-239 831.6 631 68.0
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 5.6e-233 812.0 503 79.1
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 7.3e-225 785.0 632 61.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.3e-208 731.1 975 45.3
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 9.7e-177 625.2 588 56.1
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.7e-166 589.0 430 70.0
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.5e-145 521.5 305 83.0
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 6.8e-130 469.5 390 61.8
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.7e-129 466.5 313 73.8
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.3e-88 332.4 243 66.7
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.1e-82 312.8 297 57.6
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.6e-62 245.7 136 80.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.8e-61 240.0 205 59.5
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.8e-42 179.1 140 60.0
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 5.7e-36 157.5 184 47.8
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.8e-34 152.5 108 64.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 2.2e-32 145.6 150 52.7
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 4.7e-30 137.9 156 48.1
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 2.8e-27 128.6 72 83.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.7e-25 122.1 94 64.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 7.7e-25 120.6 88 64.8
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 8.3e-19 100.5 147 43.5
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 8.0e-14 84.0 49 75.5
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.2e-12 80.1 46 80.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.6e-09 69.7 33 97.0
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 4.6e-09 68.2 77 41.6
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 3.3e-07 62.0 39 74.4
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 6.2e-06 57.8 68 47.1


User provided reference genes

Program Settings