Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.9e-66 254.2 119 100.0
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.4e-65 251.9 119 99.2
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.4e-65 251.9 119 99.2
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 5.1e-55 217.6 119 85.7
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 3.1e-52 208.4 119 81.5
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 2.0e-51 205.7 117 82.1
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.2e-48 196.4 118 76.3
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 8.1e-37 157.1 118 59.3
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 1.1e-36 156.8 120 61.7
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 1.3e-34 149.8 117 59.8
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 1.2e-32 143.3 117 57.3
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 1.2e-32 143.3 117 58.1
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 2.4e-28 129.0 119 52.9
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 2.6e-27 125.6 119 51.3
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 2.9e-26 122.1 116 50.9
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 5.0e-26 121.3 117 51.3
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 2.1e-24 115.9 118 48.3
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 1.5e-22 109.8 120 45.0
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 3.3e-22 108.6 118 45.8
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 4.5e-19 98.2 118 44.1
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 1.9e-17 92.8 83 51.8
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.9e-17 92.8 117 38.5
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 4.6e-16 88.2 119 39.5
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 4.6e-16 88.2 120 40.8
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 4.6e-16 88.2 119 39.5
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 4.6e-16 88.2 120 40.8
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 6.1e-16 87.8 116 39.7
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 1.0e-15 87.0 126 36.5
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.4e-15 86.7 119 41.2
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-15 86.3 116 39.7
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 1.8e-15 86.3 118 39.8
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 2.3e-15 85.9 113 37.2
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-15 85.9 116 37.9
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.1e-15 84.7 116 38.8
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.7e-15 84.3 116 38.8
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-14 83.6 112 39.3
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-14 82.4 116 38.8
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.3e-14 81.6 115 38.3
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 4.3e-14 81.6 116 38.8
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 9.7e-14 80.5 119 36.1
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-13 79.3 119 38.7
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-13 79.3 119 38.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-13 79.3 115 38.3
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-13 79.3 117 36.8
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.8e-13 78.2 120 36.7
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.8e-13 78.2 115 36.5
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.3e-13 77.8 119 37.8
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 6.3e-13 77.8 118 36.4
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.2e-13 77.4 121 34.7
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-12 77.0 120 37.5
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-12 77.0 120 36.7
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-12 76.6 118 36.4
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-12 76.3 120 35.8
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 3.1e-12 75.5 113 36.3
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.3e-12 74.7 114 34.2
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.1e-12 73.9 118 34.7
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-11 73.6 112 34.8
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.2e-11 73.6 114 33.3
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.5e-11 73.2 118 34.7
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.5e-11 73.2 118 34.7
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.0e-11 72.8 118 34.7
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.4e-11 72.0 118 33.9
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.0e-10 70.5 118 32.2
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-10 70.1 122 35.2
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.3e-10 70.1 117 32.5
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-10 70.1 108 33.3
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-10 70.1 116 37.1
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-10 70.1 116 37.1
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-10 70.1 116 37.1
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-10 70.1 116 37.1
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.3e-10 70.1 115 33.9
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.7e-10 69.7 118 32.2
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.7e-10 69.7 118 32.2
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.2e-10 69.3 118 31.4
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-10 69.3 117 33.3
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 2.9e-10 68.9 111 32.4
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 3.8e-10 68.6 117 32.5
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 3.8e-10 68.6 118 37.3
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 5.0e-10 68.2 110 31.8
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.5e-10 67.8 117 32.5
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.5e-10 67.8 117 32.5
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.5e-10 67.8 117 32.5
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.5e-10 67.8 109 33.9
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.5e-10 67.4 122 34.4
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.5e-10 67.4 122 34.4
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 8.5e-10 67.4 92 34.8
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.1e-09 67.0 119 33.6
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.1e-09 67.0 122 35.2
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.1e-09 67.0 92 34.8
Sabra01G0164100 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-09 67.0 122 32.0
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.9e-09 66.2 118 30.5
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-09 66.2 116 31.9
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-09 66.2 115 33.9
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 1.9e-09 66.2 118 31.4
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-09 65.9 116 35.3
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-09 65.9 116 32.8
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.2e-09 65.5 86 43.0
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.2e-09 65.5 109 33.0
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 3.2e-09 65.5 115 31.3
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.2e-09 65.1 118 30.5
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.5e-09 64.7 118 32.2
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 5.5e-09 64.7 116 31.0
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-09 64.7 118 33.1
Sabra03G0008700 Salix brachista HOM05D002599 ORTHO05D001895 5.5e-09 64.7 112 33.0
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.4e-09 63.9 118 29.7
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-08 63.5 107 30.8
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.6e-08 63.2 116 30.2
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 2.1e-08 62.8 102 35.3
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-08 62.8 103 35.9
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 2.1e-08 62.8 113 29.2
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.7e-08 62.4 116 29.3
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 2.7e-08 62.4 115 31.3
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-08 62.0 124 34.7
Manes.07G022100 Manihot esculenta HOM05D021322 ORTHO05D001895 3.6e-08 62.0 104 36.5
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 3.6e-08 62.0 118 29.7
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.9e-08 60.8 104 31.7
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 7.9e-08 60.8 103 34.0
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.9e-08 60.8 109 31.2
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 7.9e-08 60.8 115 33.0
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 7.9e-08 60.8 108 32.4
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 1.0e-07 60.5 123 35.0
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-07 60.5 106 30.2
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 1.4e-07 60.1 112 31.2
Gohir.A03G192100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-07 59.7 113 32.7
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-07 59.7 102 32.4
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 1.8e-07 59.7 104 34.6
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.3e-07 59.3 103 33.0
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-07 59.3 101 32.7
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.3e-07 59.3 116 32.8
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.3e-07 59.3 103 33.0
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 3.0e-07 58.9 111 31.5
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 3.9e-07 58.5 87 34.5
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 3.9e-07 58.5 95 34.7
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.1e-07 58.2 114 35.1
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.1e-07 58.2 114 35.1
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 6.7e-07 57.8 103 33.0
Manes.07G021900 Manihot esculenta HOM05D021322 ORTHO05D001895 6.7e-07 57.8 105 36.2
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 8.8e-07 57.4 117 32.5
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 8.8e-07 57.4 103 33.0
Sabra01G0164500 Salix brachista HOM05D002599 ORTHO05D001895 8.8e-07 57.4 97 30.9
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.1e-06 57.0 110 30.9
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-06 55.8 116 31.9
Sabra03G0006100 Salix brachista HOM05D002599 ORTHO05D001895 3.3e-06 55.5 117 34.2
Duzib052G1144 Durio zibethinus HOM05D002599 ORTHO05D001895 4.4e-06 55.1 102 36.3
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.4e-06 55.1 116 29.3
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.7e-06 54.7 104 31.7
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 9.7e-06 53.9 122 32.8


User provided reference genes

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