Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G220300 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-58 228.8 111 100.0
Potri.004G219600 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-55 217.6 111 96.4
Sabra01G0164300 Salix brachista HOM05D016764 ORTHO05D001895 1.0e-41 173.3 110 73.6
Sabra01G0166700 Salix brachista HOM05D016764 ORTHO05D001895 1.6e-39 166.0 105 77.1
Potri.003G011000 Populus trichocarpa HOM05D016764 ORTHO05D001895 1.7e-36 156.0 105 70.5
Potri.003G010800 Populus trichocarpa HOM05D016764 ORTHO05D001895 6.4e-36 154.1 105 69.5
Sabra03G0006300 Salix brachista HOM05D016764 ORTHO05D001895 7.6e-29 130.6 98 63.3
Sabra03G0006200 Salix brachista HOM05D016764 ORTHO05D001895 1.3e-25 119.8 86 65.1
Potri.004G220000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-24 115.9 107 53.3
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 5.5e-19 97.8 105 48.6
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 9.3e-19 97.1 105 47.6
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 1.0e-17 93.6 99 46.5
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 6.3e-15 84.3 108 39.8
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.4e-14 82.4 106 41.5
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.0e-14 80.5 103 42.7
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.2e-13 80.1 103 40.8
Potri.003G025350 Populus trichocarpa HOM05D016764 ORTHO05D001895 3.4e-13 78.6 84 50.0
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.0e-12 77.0 103 41.7
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-12 77.0 94 39.4
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-12 77.0 105 36.2
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-12 76.6 105 39.0
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-12 76.6 105 38.1
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-12 76.6 106 34.9
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-12 76.6 105 37.1
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-12 76.3 103 40.8
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-12 76.3 105 35.2
Duzib052G0486 Durio zibethinus HOM05D002599 ORTHO05D001895 2.2e-12 75.9 108 36.1
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-12 75.9 102 35.3
Gorai.012G151100 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-12 75.9 106 37.7
Manes.07G021750 Manihot esculenta HOM05D016764 ORTHO05D001895 2.2e-12 75.9 67 50.7
Duzib052G1144 Durio zibethinus HOM05D002599 ORTHO05D001895 2.9e-12 75.5 106 37.7
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.9e-12 75.5 105 36.2
COL.COLO4_11751 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.8e-12 75.1 112 37.5
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 3.8e-12 75.1 109 41.3
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.8e-12 75.1 106 37.7
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.0e-12 74.7 102 35.3
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.5e-12 74.3 105 36.2
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 6.5e-12 74.3 105 35.2
Gohir.A04G121842 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-11 73.6 106 37.7
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-11 73.6 102 35.3
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-11 73.6 105 34.3
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-11 73.6 88 37.5
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-11 73.2 105 35.2
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-11 73.2 105 37.1
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-11 73.2 106 36.8
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-11 73.2 88 39.8
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.4e-11 73.2 101 36.6
Gohir.D04G163300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.2e-11 72.0 114 34.2
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.2e-11 72.0 106 32.1
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.2e-11 72.0 106 32.1
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 4.2e-11 71.6 110 35.5
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.2e-11 71.6 107 34.6
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 4.2e-11 71.6 101 34.7
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 4.2e-11 71.6 106 41.5
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.4e-11 70.5 105 34.3
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-11 70.5 106 33.0
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-11 70.5 107 34.6
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 9.4e-11 70.5 83 38.6
Gohir.A04G121884 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-10 70.1 106 37.7
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-10 70.1 105 36.2
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.6e-10 69.7 110 34.5
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-10 69.7 93 38.7
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-10 69.3 106 32.1
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.7e-10 68.9 105 36.2
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.6e-10 68.6 91 38.5
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 3.6e-10 68.6 100 36.0
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-10 68.6 93 37.6
Gorai.012G151200 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.6e-10 68.2 106 36.8
Gohir.D04G163133 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.1e-10 67.8 106 34.9
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.1e-10 67.8 83 38.6
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.9e-10 67.4 103 35.9
Gohir.D04G163166 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.9e-10 67.4 106 36.8
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-09 67.0 81 37.0
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-09 67.0 84 39.3
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-09 66.6 90 38.9
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-09 66.6 90 38.9
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.4e-09 66.6 110 33.6
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.4e-09 66.6 90 38.9
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 1.8e-09 66.2 106 38.7
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-09 66.2 114 32.5
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 1.8e-09 66.2 105 33.3
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.3e-09 65.9 81 42.0
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-09 65.9 103 35.9
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 2.3e-09 65.9 91 37.4
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 2.3e-09 65.9 84 38.1
Gohir.D12G026700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-09 65.5 114 31.6
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 3.9e-09 65.1 99 37.4
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-09 65.1 107 35.5
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 3.9e-09 65.1 92 38.0
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 5.1e-09 64.7 90 34.4
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.7e-09 64.3 103 35.0
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 6.7e-09 64.3 106 34.9
Sabra01G0167100 Salix brachista HOM05D008886 ORTHO05D001895 6.7e-09 64.3 110 34.5
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.7e-09 64.3 102 35.3
Gorai.008G027000 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.8e-09 63.9 93 36.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.1e-08 63.5 105 32.4
Gohir.D12G026733 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-08 63.5 107 34.6
Potri.004G010850 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.1e-08 63.5 97 33.0
Sabra01G0164100 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-08 63.5 102 36.3
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-08 63.2 84 38.1
Gohir.A12G027233 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.5e-08 62.4 107 34.6
Potri.011G005200 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.5e-08 62.4 92 34.8
Sabra09G0045600 Salix brachista HOM05D008886 ORTHO05D001895 2.5e-08 62.4 104 34.6
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 2.5e-08 62.4 84 38.1
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-08 62.0 104 38.5
Sabra07G0096600 Salix brachista HOM05D000527 ORTHO05D017379 3.3e-08 62.0 97 37.1
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-08 62.0 103 36.9
Gohir.A12G027266 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.3e-08 61.6 107 34.6
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.7e-08 61.2 82 37.8
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.7e-08 61.2 105 36.2
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 7.4e-08 60.8 106 33.0
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.4e-08 60.8 103 35.9
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 7.4e-08 60.8 107 31.8
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-07 60.1 81 38.3
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-07 60.1 81 38.3
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-07 60.1 103 35.9
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-07 60.1 86 38.4
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.3e-07 60.1 80 38.8
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.7e-07 59.7 109 32.1
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.7e-07 59.7 104 32.7
Sabra01G0166800 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-07 59.7 90 38.9
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-07 59.7 89 34.8
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-07 59.3 101 30.7
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-07 58.9 104 37.5
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-07 58.9 100 31.0
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.8e-07 58.9 104 37.5
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-07 58.9 106 34.9
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-07 58.9 95 37.9
Potri.007G119400 Populus trichocarpa HOM05D008886 ORTHO05D001895 4.8e-07 58.2 107 31.8
Sabra01G0167400 Salix brachista HOM05D008886 ORTHO05D001895 4.8e-07 58.2 83 41.0
Atru.chr6.323 Acer truncatum HOM05D002599 ORTHO05D001895 6.3e-07 57.8 80 35.0
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 6.3e-07 57.8 108 28.7
Manes.07G021900 Manihot esculenta HOM05D021322 ORTHO05D001895 6.3e-07 57.8 107 33.6
Manes.07G022100 Manihot esculenta HOM05D021322 ORTHO05D001895 6.3e-07 57.8 106 34.0
Potri.004G221300 Populus trichocarpa HOM05D008886 ORTHO05D001895 8.2e-07 57.4 83 36.1
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 8.2e-07 57.4 109 33.0
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 1.4e-06 56.6 104 32.7
Thecc.07G108300 Theobroma cacao HOM05D009888 ORTHO05D001895 1.4e-06 56.6 105 30.5
EL10Ac5g12338 Beta vulgaris HOM05D035930 ORTHO05D001895 1.8e-06 56.2 98 30.6
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-06 56.2 107 32.7
Sabra16G0267500 Salix brachista HOM05D008886 ORTHO05D001895 1.8e-06 56.2 81 37.0
Sabra16G0269300 Salix brachista HOM05D008886 ORTHO05D001895 3.1e-06 55.5 81 35.8
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 3.1e-06 55.5 105 29.5
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 5.3e-06 54.7 105 36.2
Manes.07G021600 Manihot esculenta HOM05D002599 ORTHO05D001895 6.9e-06 54.3 104 35.6
Prupe.1G574200 Prunus persica HOM05D002599 ORTHO05D001895 6.9e-06 54.3 113 35.4
Sabra01G0167200 Salix brachista HOM05D008886 ORTHO05D001895 6.9e-06 54.3 102 32.4
Sabra03G0006400 Salix brachista HOM05D002599 ORTHO05D001895 6.9e-06 54.3 103 31.1
Atru.chr6.1076 Acer truncatum HOM05D008886 ORTHO05D001895 9.1e-06 53.9 106 31.1
Sabra07G0097000 Salix brachista HOM05D000527 ORTHO05D017379 9.1e-06 53.9 98 33.7


User provided reference genes

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