Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.2e-56 223.0 121 100.0
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 1.8e-52 209.1 125 92.0
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.0e-46 189.1 125 84.0
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 2.2e-45 185.7 123 82.9
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 6.6e-34 147.5 125 70.4
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.6e-30 135.6 124 65.3
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 9.8e-30 133.7 125 64.8
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.3e-29 133.3 120 65.8
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.7e-29 132.9 120 66.7
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.2e-29 132.5 120 65.8
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 7.0e-28 127.5 125 62.4
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 1.2e-27 126.7 116 65.5
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.7e-27 125.6 108 68.5
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 2.7e-27 125.6 120 65.0
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 3.5e-27 125.2 126 65.1
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 4.6e-27 124.8 124 63.7
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.0e-26 123.6 124 64.5
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.3e-26 123.2 116 61.2
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.3e-26 123.2 120 65.8
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.7e-26 122.9 113 63.7
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.3e-26 122.5 120 65.0
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.3e-26 122.5 124 62.9
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 3.9e-26 121.7 125 60.8
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 3.9e-26 121.7 124 62.9
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 3.9e-26 121.7 125 61.6
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 5.0e-26 121.3 117 63.2
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 6.6e-26 120.9 122 62.3
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.6e-26 120.9 117 63.2
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.1e-25 120.2 116 60.3
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.5e-25 119.8 120 63.3
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.9e-25 119.4 115 63.5
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.5e-25 119.0 120 64.2
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 3.3e-25 118.6 122 62.3
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 5.6e-25 117.9 122 63.1
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 5.6e-25 117.9 117 60.7
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 5.6e-25 117.9 124 62.1
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 5.6e-25 117.9 121 61.2
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 5.6e-25 117.9 126 60.3
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 7.3e-25 117.5 116 58.6
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 7.3e-25 117.5 125 60.0
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.3e-25 117.5 125 60.0
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 7.3e-25 117.5 118 62.7
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 9.5e-25 117.1 120 62.5
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-24 116.7 118 63.6
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.2e-24 116.7 122 60.7
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.6e-24 116.3 125 59.2
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.1e-24 115.9 122 63.9
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 2.8e-24 115.5 129 57.4
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.8e-24 115.5 125 59.2
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 4.7e-24 114.8 126 59.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 6.2e-24 114.4 126 59.5
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 6.2e-24 114.4 117 61.5
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 6.2e-24 114.4 116 62.1
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 6.2e-24 114.4 125 59.2
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 6.2e-24 114.4 122 59.8
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.0e-23 113.6 126 59.5
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 1.4e-23 113.2 121 56.2
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.4e-23 113.2 121 59.5
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 2.3e-23 112.5 126 60.3
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 2.3e-23 112.5 126 60.3
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 2.3e-23 112.5 120 59.2
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.1e-23 112.1 121 58.7
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 4.0e-23 111.7 126 60.3
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 4.0e-23 111.7 116 61.2
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 4.0e-23 111.7 116 61.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 6.8e-23 110.9 121 59.5
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 6.8e-23 110.9 125 57.6
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 6.8e-23 110.9 125 60.8
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.2e-22 110.2 125 57.6
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.2e-22 110.2 113 60.2
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-22 110.2 118 62.7
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-22 110.2 120 59.2
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.5e-22 109.8 117 59.0
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 2.0e-22 109.4 121 57.0
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 2.6e-22 109.0 126 56.3
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 4.4e-22 108.2 127 59.1
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 7.5e-22 107.5 121 56.2
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 9.8e-22 107.1 121 54.5
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 9.8e-22 107.1 124 58.1
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 9.8e-22 107.1 121 57.0
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.3e-21 106.7 123 61.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.3e-21 106.7 123 61.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.3e-21 106.7 123 61.0
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.3e-21 106.7 127 55.9
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.3e-21 106.7 125 58.4
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 3.7e-21 105.1 120 57.5
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 8.3e-21 104.0 120 59.2
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 8.3e-21 104.0 127 59.1
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.4e-20 103.2 123 56.9
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.9e-20 102.8 123 55.3
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.4e-20 102.4 116 60.3
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.4e-20 102.4 116 60.3
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 3.2e-20 102.1 125 57.6
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 3.2e-20 102.1 125 57.6
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 3.2e-20 102.1 125 57.6
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 4.1e-20 101.7 124 56.5
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 4.1e-20 101.7 113 54.9
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 4.1e-20 101.7 110 58.2
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 9.2e-20 100.5 124 56.5
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.2e-19 100.1 110 59.1
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 2.0e-19 99.4 113 56.6
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 7.8e-19 97.4 114 52.6
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 1.0e-18 97.1 109 56.9
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.3e-18 96.7 133 51.9
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 5.0e-18 94.7 128 50.0
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.5e-17 93.2 111 55.9
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 4.3e-17 91.7 121 52.1
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 3.6e-16 88.6 116 51.7
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 4.7e-16 88.2 116 50.9
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 4.7e-16 88.2 161 44.7
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 4.7e-16 88.2 108 52.8
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.2e-16 87.8 111 51.4
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 8.1e-16 87.4 113 49.6
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.1e-15 87.0 111 51.4
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 3.4e-14 82.0 111 50.5
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 5.8e-14 81.3 93 54.8
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 9.8e-14 80.5 123 48.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.3e-13 80.1 108 50.0
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 2.9e-13 79.0 100 53.0
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.7e-13 78.6 111 53.2
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 6.4e-13 77.8 117 50.4
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 4.1e-12 75.1 122 49.2
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 9.2e-12 73.9 119 51.3
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 9.2e-12 73.9 91 53.8
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.2e-11 73.6 126 45.2
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.6e-11 73.2 91 53.8
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.7e-11 72.4 70 58.6
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.7e-11 72.4 70 58.6
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.6e-11 71.6 112 42.0
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 7.8e-11 70.9 81 55.6
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 7.8e-11 70.9 132 43.9
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.0e-10 68.9 81 55.6
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.0e-10 68.9 81 54.3
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 6.6e-10 67.8 81 54.3
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 8.6e-10 67.4 71 56.3
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.1e-09 67.0 88 48.9
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.5e-09 66.6 101 47.5
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.5e-09 66.6 59 69.5
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 7.3e-09 64.3 70 52.9
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 3.6e-08 62.0 72 61.1
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.4e-07 60.1 87 46.0
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.8e-07 59.7 111 39.6
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.1e-07 58.9 73 56.2
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 2.6e-06 55.8 44 68.2
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 5.8e-06 54.7 39 66.7
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 9.9e-06 53.9 43 72.1


User provided reference genes

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