Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 6.6e-84 313.9 152 100.0
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 5.5e-78 294.3 152 93.4
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 6.2e-74 280.8 149 89.3
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.8e-73 279.3 149 89.9
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 2.1e-66 255.8 152 79.6
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 1.4e-65 253.1 151 82.1
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 1.8e-65 252.7 150 80.7
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 9.0e-65 250.4 149 81.9
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 5.9e-64 247.7 149 78.5
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 7.6e-64 247.3 149 79.2
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 2.2e-63 245.7 151 80.1
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 1.4e-62 243.0 149 77.9
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 4.2e-62 241.5 150 79.3
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.6e-61 239.6 150 78.7
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.7e-61 238.8 152 78.3
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 4.6e-61 238.0 149 78.5
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 6.1e-61 237.7 150 76.0
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.0e-60 236.9 150 76.7
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 1.3e-60 236.5 152 76.3
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 1.3e-60 236.5 152 76.3
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 1.3e-60 236.5 152 76.3
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 3.0e-60 235.3 149 75.8
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 3.0e-60 235.3 152 73.0
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 3.0e-60 235.3 152 73.0
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 3.9e-60 235.0 152 77.6
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 6.7e-60 234.2 152 73.0
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 8.7e-60 233.8 145 76.6
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 8.7e-60 233.8 150 77.3
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.5e-59 233.0 150 77.3
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 1.5e-59 233.0 153 76.5
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.9e-59 232.6 152 75.7
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 2.5e-59 232.3 152 71.7
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 3.3e-59 231.9 152 76.3
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 3.3e-59 231.9 152 76.3
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 4.3e-59 231.5 152 71.7
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 7.4e-59 230.7 152 71.7
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 7.4e-59 230.7 152 71.7
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 1.3e-58 229.9 152 74.3
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 2.2e-58 229.2 152 76.3
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 2.2e-58 229.2 152 76.3
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 2.2e-58 229.2 152 76.3
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 3.7e-58 228.4 152 74.3
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 3.7e-58 228.4 149 74.5
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 4.8e-58 228.0 152 72.4
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.1e-57 226.9 149 72.5
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 1.1e-57 226.9 149 74.5
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 1.1e-57 226.9 149 74.5
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 1.4e-57 226.5 152 69.7
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 71.1
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 71.1
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 3.1e-57 225.3 147 74.8
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 4.1e-57 224.9 149 73.8
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 6.9e-57 224.2 150 74.0
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 6.9e-57 224.2 150 75.3
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 9.0e-57 223.8 152 71.7
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 1.5e-56 223.0 148 73.6
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 2.0e-56 222.6 149 73.2
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 2.6e-56 222.2 144 74.3
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 3.4e-56 221.9 150 74.0
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 3.4e-56 221.9 149 71.1
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 1.1e-54 216.9 178 63.5
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 1.9e-54 216.1 148 73.0
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 4.2e-54 214.9 141 73.0
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 2.1e-53 212.6 153 69.3
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 2.1e-53 212.6 145 72.4
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 2.7e-53 212.2 115 82.6
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 3.6e-53 211.8 149 67.8
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 4.6e-53 211.5 153 67.3
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 4.6e-53 211.5 150 72.7
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 4.6e-53 211.5 153 69.3
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 1.0e-52 210.3 149 71.1
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.9e-52 208.4 151 71.5
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 5.1e-52 208.0 113 79.6
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 6.7e-52 207.6 151 70.9
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 6.7e-52 207.6 152 72.4
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 1.1e-51 206.8 146 71.9
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.0e-51 206.1 151 70.2
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.6e-51 205.7 150 70.0
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.6e-51 205.7 151 70.2
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 3.3e-51 205.3 146 71.9
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 3.3e-51 205.3 141 71.6
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 3.3e-51 205.3 151 70.9
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 5.7e-51 204.5 114 80.7
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 5.7e-51 204.5 150 70.7
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 5.7e-51 204.5 151 68.9
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 5.7e-51 204.5 144 68.1
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 7.4e-51 204.1 152 65.1
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 7.4e-51 204.1 147 69.4
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 4.8e-50 201.4 124 76.6
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 6.3e-50 201.1 152 63.2
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 8.2e-50 200.7 123 78.9
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 1.1e-49 200.3 145 68.3
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 1.4e-49 199.9 148 68.9
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.8e-49 199.5 149 67.1
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 3.1e-49 198.7 151 68.9
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 6.9e-49 197.6 148 68.2
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 1.2e-48 196.8 120 78.3
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 4.5e-48 194.9 151 64.9
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 5.9e-48 194.5 147 68.0
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 1.3e-47 193.4 116 75.0
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 1.7e-47 193.0 115 77.4
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 2.9e-47 192.2 145 66.9
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 2.3e-44 182.6 145 63.4
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 2.6e-43 179.1 94 85.1
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 3.7e-42 175.3 89 86.5
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 3.7e-42 175.3 148 62.2
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 1.4e-41 173.3 150 59.3
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 4.1e-41 171.8 115 74.8
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 4.1e-41 171.8 120 70.8
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 3.5e-40 168.7 149 58.4
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.5e-40 168.7 87 86.2
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.3e-39 166.8 149 58.4
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.2e-39 166.0 151 60.3
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.1e-38 163.7 145 58.6
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 5.5e-38 161.4 121 68.6
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 1.4e-36 156.8 120 63.3
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 1.8e-36 156.4 118 66.9
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 1.8e-36 156.4 89 77.5
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.8e-33 146.4 123 65.0
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.8e-31 138.7 119 63.0
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 6.5e-31 137.9 152 51.3
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 3.2e-30 135.6 118 61.9
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 6.8e-28 127.9 67 85.1
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 8.8e-28 127.5 119 58.0
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 5.7e-27 124.8 115 62.6
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 2.8e-26 122.5 91 67.0
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 3.5e-24 115.5 93 65.6
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 4.0e-20 102.1 91 51.6
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 6.3e-18 94.7 92 46.7
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 2.7e-16 89.4 157 40.1
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.0e-15 87.4 74 66.2
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.2e-13 80.5 87 56.3
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 2.4e-09 66.2 79 55.7
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 9.2e-09 64.3 79 54.4


User provided reference genes

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