Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 0.0e+00 1109.0 566 100.0
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.8e-307 1058.5 564 95.9
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.3e-294 1015.8 566 90.3
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 5.9e-287 990.3 569 87.9
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 5.6e-277 957.2 566 84.1
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 3.5e-271 937.9 566 83.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 3.1e-267 924.9 566 82.7
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 4.0e-267 924.5 565 82.3
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 5.8e-266 920.6 559 82.5
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 2.9e-265 918.3 566 80.2
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 2.9e-265 918.3 565 81.4
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 4.1e-264 914.4 634 74.9
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 4.1e-264 914.4 566 80.7
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 5.4e-264 914.1 566 80.9
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.6e-263 912.5 560 82.1
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 8.6e-262 906.7 560 80.9
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 2.5e-261 905.2 566 78.8
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 2.5e-261 905.2 557 81.5
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 5.6e-261 904.0 566 79.9
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.2e-260 902.9 566 79.7
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 2.1e-260 902.1 565 79.5
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.7e-260 901.0 566 79.7
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 1.1e-259 899.8 563 79.2
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.0e-258 895.6 565 79.1
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 3.4e-258 894.8 558 80.5
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.3e-257 892.9 558 79.9
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.2e-257 892.1 558 79.6
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.8e-257 891.3 558 79.9
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 8.4e-257 890.2 567 77.4
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.4e-256 889.4 566 78.3
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 7.1e-256 887.1 558 79.6
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.6e-255 885.9 566 77.9
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.1e-255 885.6 563 78.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.1e-255 885.6 558 79.4
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.7e-255 885.2 562 78.5
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.5e-255 884.8 559 79.2
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.8e-255 883.6 562 78.8
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.0e-254 883.2 562 78.3
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.3e-254 882.9 563 78.2
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.5e-253 879.4 566 77.6
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.9e-253 879.0 566 77.4
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.3e-253 878.2 577 77.1
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.8e-252 875.2 567 78.3
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.8e-252 874.4 558 79.0
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 6.2e-252 874.0 566 77.7
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.4e-251 872.8 566 77.2
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.8e-251 872.5 567 78.1
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.8e-251 872.5 585 75.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.8e-251 872.5 567 77.6
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 5.3e-251 870.9 555 78.9
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.2e-250 869.8 566 76.7
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.6e-250 868.6 548 79.6
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.7e-249 865.9 566 77.4
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.4e-248 862.1 568 75.7
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.4e-248 862.1 566 76.3
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 7.1e-248 860.5 545 78.0
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.6e-246 854.0 566 76.3
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 1.5e-245 852.8 572 75.5
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 2.5e-245 852.0 584 73.8
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.1e-243 846.7 608 72.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 9.0e-243 843.6 565 74.3
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.5e-242 842.8 586 73.4
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 3.4e-242 841.6 563 75.0
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 3.8e-241 838.2 566 74.6
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 6.4e-241 837.4 558 74.9
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.4e-240 835.5 558 74.7
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 3.2e-240 835.1 563 74.2
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 9.3e-240 833.6 565 73.6
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.2e-239 833.2 566 75.8
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.6e-239 832.8 566 72.8
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.7e-239 832.0 563 74.4
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 3.9e-238 828.2 560 73.6
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.1e-237 826.6 560 73.9
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.5e-237 826.2 563 73.7
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.9e-237 825.9 560 73.8
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 7.4e-237 823.9 567 74.1
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 9.6e-237 823.5 567 72.3
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 2.8e-236 822.0 560 73.4
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.7e-236 821.6 554 76.5
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.1e-235 820.1 566 71.2
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-235 820.1 565 71.7
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.5e-234 816.2 554 76.0
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.4e-234 815.1 566 71.9
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 4.5e-234 814.7 567 71.3
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 4.5e-234 814.7 573 73.1
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 7.6e-234 813.9 560 72.5
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.0e-233 813.5 566 71.9
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.0e-233 813.5 566 71.9
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.3e-233 813.1 560 73.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 2.2e-233 812.4 560 72.3
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 4.9e-233 811.2 565 71.2
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 6.5e-233 810.8 566 71.6
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 6.5e-233 810.8 564 71.3
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.7e-231 805.4 569 73.3
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.3e-230 803.1 559 71.6
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 3.0e-230 802.0 568 72.2
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.1e-229 800.0 568 72.2
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.9e-229 799.3 568 72.2
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.1e-228 795.8 604 67.5
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 3.7e-228 795.0 521 75.2
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 8.2e-228 793.9 544 72.6
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.4e-227 792.3 545 72.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 9.0e-227 790.4 562 71.7
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 6.5e-225 784.3 558 72.6
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 4.2e-224 781.6 600 67.7
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.5e-224 781.2 622 66.7
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.2e-224 780.8 557 71.8
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.2e-223 780.0 541 72.3
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 9.7e-221 770.4 559 71.4
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 6.3e-220 767.7 556 66.9
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.4e-219 766.5 640 62.3
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 4.1e-219 765.0 568 69.0
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 7.2e-216 754.2 556 67.6
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 5.1e-214 748.0 566 66.3
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 4.3e-213 745.0 477 77.4
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 6.9e-211 737.6 577 65.2
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 9.1e-211 737.3 455 81.1
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.0e-209 733.8 558 64.0
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.8e-198 696.4 566 64.1
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.4e-195 686.0 478 71.5
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 5.0e-193 678.3 564 60.3
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 3.2e-192 675.6 478 70.3
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.7e-191 672.5 506 62.8
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 9.8e-181 637.5 550 57.8
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 7.0e-179 631.3 560 57.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.4e-173 612.1 421 72.0
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.9e-164 582.0 368 78.5
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.7e-162 576.2 402 70.6
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 6.6e-161 571.6 402 70.1
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.5e-160 570.5 359 79.4
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 7.3e-160 568.2 402 69.9
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 2.8e-143 513.1 550 49.3
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.2e-132 476.9 534 45.3
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.5e-128 463.4 343 70.0
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 5.3e-126 455.7 272 82.4
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.2e-116 423.7 339 66.7
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.2e-100 370.5 220 79.1
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 2.5e-83 313.9 195 76.4
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 6.5e-76 289.3 200 75.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.0e-65 255.4 196 68.9
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.9e-51 208.0 177 62.1
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 3.3e-51 207.2 152 65.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 3.1e-49 200.7 147 67.3
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 3.9e-44 183.7 117 76.1
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.1e-43 182.2 189 53.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.4e-31 139.8 85 87.1
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.5e-27 128.6 103 64.1
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.8e-26 124.4 83 74.7
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.9e-22 111.7 92 59.8
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.2e-22 110.9 89 60.7
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 6.0e-21 106.7 109 50.5
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.2e-18 96.7 111 45.9
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.1e-09 69.3 55 61.8
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 9.9e-08 62.8 112 33.9


User provided reference genes

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