Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 7.6e-204 714.5 685 100.0
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 4.7e-113 412.9 572 66.4
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.9e-101 374.4 548 61.1
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.0e-86 325.5 311 81.0
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 2.4e-72 277.7 236 80.9
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 6.1e-68 263.1 544 46.3
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 8.8e-59 232.6 574 43.0
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 2.8e-57 227.6 573 42.8
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 4.5e-55 220.3 552 37.9
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.3e-54 218.8 570 40.0
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 1.5e-53 215.3 582 38.8
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.9e-53 214.9 563 37.5
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 8.0e-52 209.5 448 42.2
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.0e-51 209.1 559 42.2
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.4e-51 208.8 559 42.2
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.4e-51 208.8 377 43.0
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 3.0e-51 207.6 486 43.6
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.7e-50 203.4 531 45.4
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 9.7e-50 202.6 559 43.5
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 1.3e-49 202.2 560 44.5
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.3e-49 202.2 560 44.5
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 2.2e-49 201.4 559 45.4
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 8.2e-49 199.5 555 40.9
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.1e-48 199.1 554 36.1
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 2.4e-48 198.0 558 37.8
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.6e-47 195.3 584 35.1
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 9.4e-45 186.0 560 37.3
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 1.8e-43 181.8 519 36.8
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 5.2e-43 180.3 449 40.8
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.3e-41 175.6 443 39.3
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.8e-40 171.8 549 38.6
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 3.1e-40 171.0 531 38.8
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.0e-38 166.0 555 40.5
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 2.9e-38 164.5 551 34.8
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 6.5e-38 163.3 583 37.7
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 6.5e-38 163.3 551 40.3
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 8.5e-38 162.9 367 41.4
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 1.5e-37 162.2 260 43.5
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 1.5e-37 162.2 260 43.5
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.2e-37 161.0 371 44.2
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 4.2e-37 160.6 269 43.1
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 4.2e-37 160.6 269 43.1
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 7.2e-37 159.8 424 43.2
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 9.4e-37 159.5 454 37.2
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 9.4e-37 159.5 545 44.8
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 1.2e-36 159.1 397 42.8
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.2e-36 159.1 559 47.2
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.7e-36 157.9 431 34.1
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 3.6e-36 157.5 407 36.1
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 3.6e-36 157.5 371 47.2
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.0e-35 156.0 397 42.6
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.4e-35 155.6 545 31.0
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 1.4e-35 155.6 583 35.5
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.8e-35 155.2 256 53.1
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 2.3e-35 154.8 178 59.0
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.0e-35 154.5 270 52.2
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 4.0e-35 154.1 400 40.0
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 5.2e-35 153.7 392 40.8
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 6.8e-35 153.3 174 50.6
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.2e-34 152.5 331 35.0
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 1.2e-34 152.5 494 33.8
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.2e-34 152.5 318 33.3
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.2e-34 152.5 561 47.2
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 1.2e-34 152.5 549 42.4
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.2e-34 152.5 516 39.7
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.2e-34 152.5 376 45.7
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 2.0e-34 151.8 173 50.3
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 2.0e-34 151.8 176 49.4
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.6e-34 151.4 525 39.0
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 2.6e-34 151.4 405 43.5
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 3.4e-34 151.0 545 30.8
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 3.4e-34 151.0 517 37.1
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 7.5e-34 149.8 578 41.7
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 7.5e-34 149.8 257 43.6
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 7.5e-34 149.8 366 38.5
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 9.8e-34 149.4 270 49.6
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.2e-33 148.3 441 35.6
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 2.8e-33 147.9 170 48.2
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 6.3e-33 146.7 168 50.6
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 1.8e-32 145.2 474 34.2
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 3.1e-32 144.4 586 33.3
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 7.0e-32 143.3 172 51.7
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.2e-31 142.5 700 33.6
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 2.0e-31 141.7 282 39.7
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 2.7e-31 141.4 557 39.3
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 4.5e-31 140.6 566 33.7
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 5.9e-31 140.2 402 34.8
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.3e-30 139.0 543 34.1
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 2.5e-29 134.8 284 42.6
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 7.2e-29 133.3 413 34.4
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 7.2e-29 133.3 708 32.9
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 1.2e-28 132.5 262 50.8
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.8e-28 131.3 350 38.3
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 4.7e-28 130.6 244 43.4
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 8.0e-28 129.8 349 44.1
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 1.0e-27 129.4 385 34.5
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 6.8e-27 126.7 367 36.5
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 2.6e-26 124.8 347 43.8
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 5.7e-26 123.6 588 31.8
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 5.7e-26 123.6 99 72.7
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 2.2e-25 121.7 380 46.6
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.9e-25 120.6 404 33.4
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 6.4e-25 120.2 303 34.7
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 7.0e-24 116.7 99 69.7
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.0e-23 115.2 264 36.7
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.0e-23 115.2 663 34.2
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 2.0e-23 115.2 145 48.3
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 1.3e-22 112.5 215 39.5
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 1.7e-22 112.1 437 29.3
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 3.9e-22 110.9 232 40.5
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 3.9e-22 110.9 500 33.6
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 5.0e-22 110.5 206 39.8
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 3.3e-21 107.8 281 45.6
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 3.3e-21 107.8 127 48.8
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 5.6e-21 107.1 325 49.2
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.2e-20 105.9 404 33.9
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 3.6e-20 104.4 261 38.3
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 8.0e-20 103.2 267 45.7
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 1.0e-19 102.8 497 29.8
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 5.2e-19 100.5 401 35.7
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 8.9e-19 99.8 66 60.6
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 8.9e-19 99.8 66 68.2
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 8.9e-19 99.8 482 29.3
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 2.2e-17 95.1 243 39.5
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.9e-17 94.7 110 53.6
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 6.4e-17 93.6 430 31.6
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 8.3e-17 93.2 273 54.6
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 9.2e-16 89.7 430 39.5
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 2.0e-15 88.6 69 52.2
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.0e-14 86.3 178 39.9
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.0e-14 86.3 136 33.8
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.3e-14 85.9 69 50.7
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.3e-14 85.1 132 34.8
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 2.3e-14 85.1 68 52.9
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 2.3e-14 85.1 479 36.5
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 3.9e-14 84.3 69 53.6
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 6.6e-14 83.6 129 48.8
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 2.5e-13 81.6 61 55.7
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.3e-13 80.9 62 58.1
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 7.3e-13 80.1 512 29.7
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 2.8e-12 78.2 138 41.3
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 5.2e-11 73.9 229 35.4
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 6.8e-11 73.6 134 38.8
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 1.2e-10 72.8 70 48.6
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 1.5e-10 72.4 170 34.7
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 1.5e-10 72.4 66 47.0
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 2.6e-10 71.6 62 50.0
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 4.4e-10 70.9 171 33.9
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 9.8e-10 69.7 66 45.5
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 1.7e-09 68.9 167 32.9
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 3.7e-09 67.8 244 28.7
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.7e-09 67.8 136 27.9
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.7e-09 67.8 136 27.9
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.3e-09 66.6 325 28.9
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.3e-09 66.6 383 30.5
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 1.1e-08 66.2 46 56.5
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 2.4e-08 65.1 543 33.3
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 2.4e-08 65.1 163 31.9
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 2.4e-08 65.1 163 31.9
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 2.4e-08 65.1 163 31.9
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.1e-08 64.3 52 50.0
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 4.1e-08 64.3 37 62.2
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 5.4e-08 63.9 129 56.6
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.2e-07 62.8 325 28.0
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 6.0e-07 60.5 46 52.2
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 5.1e-06 57.4 174 30.5


User provided reference genes

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