Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 1.3e-60 236.1 113 100.0
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 8.5e-44 180.3 105 76.2
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 1.4e-41 172.9 96 79.2
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 2.3e-41 172.2 93 78.5
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 2.3e-41 172.2 96 79.2
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 4.0e-41 171.4 92 79.3
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 5.2e-41 171.0 92 78.3
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 5.2e-41 171.0 106 72.6
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 5.2e-41 171.0 100 78.0
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 2.0e-40 169.1 113 71.7
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 2.0e-40 169.1 106 72.6
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 5.7e-40 167.5 101 74.3
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 7.5e-40 167.2 94 76.6
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 9.8e-40 166.8 101 73.3
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 1.3e-39 166.4 106 69.8
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 1.7e-39 166.0 103 72.8
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 1.7e-39 166.0 106 70.8
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 2.2e-39 165.6 106 74.5
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 4.8e-39 164.5 97 76.3
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 6.3e-39 164.1 103 72.8
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 6.3e-39 164.1 103 72.8
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 6.3e-39 164.1 96 76.0
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 1.1e-38 163.3 93 74.2
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 1.4e-38 162.9 102 69.6
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 3.1e-38 161.8 95 75.8
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 1.2e-37 159.8 96 71.9
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 1.6e-37 159.5 94 74.5
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 1.6e-37 159.5 113 67.3
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 2.0e-37 159.1 99 76.8
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 2.7e-37 158.7 98 68.4
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 2.7e-37 158.7 102 70.6
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 3.5e-37 158.3 110 65.5
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 3.5e-37 158.3 103 70.9
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 4.5e-37 157.9 103 65.0
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 1.0e-36 156.8 97 72.2
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 1.7e-36 156.0 103 69.9
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 3.8e-36 154.8 92 70.7
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 5.0e-36 154.5 93 72.0
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 6.5e-36 154.1 96 69.8
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 8.5e-36 153.7 103 69.9
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.1e-35 153.3 100 70.0
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.1e-35 153.3 100 70.0
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 1.5e-35 152.9 119 62.2
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 1.5e-35 152.9 115 62.6
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 1.9e-35 152.5 110 65.5
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 1.9e-35 152.5 95 68.4
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 2.5e-35 152.1 100 67.0
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 3.2e-35 151.8 97 68.0
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 3.2e-35 151.8 95 70.5
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 4.2e-35 151.4 95 68.4
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 7.2e-35 150.6 97 66.0
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 7.2e-35 150.6 103 68.9
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 9.5e-35 150.2 104 64.4
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 9.5e-35 150.2 103 67.0
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 9.5e-35 150.2 96 68.8
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-34 149.4 100 69.0
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 4.7e-34 147.9 100 68.0
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 8.0e-34 147.1 100 68.0
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 8.0e-34 147.1 106 63.2
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 1.0e-33 146.7 93 71.0
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 1.4e-33 146.4 101 64.4
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.3e-33 145.6 100 67.0
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 3.0e-33 145.2 95 67.4
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 2.0e-32 142.5 98 64.3
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 2.6e-32 142.1 171 45.0
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 2.6e-32 142.1 96 65.6
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 5.7e-32 141.0 98 62.2
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 5.7e-32 141.0 95 66.3
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.7e-31 139.4 120 60.0
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 2.2e-31 139.0 98 62.2
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 2.2e-31 139.0 102 64.7
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 2.2e-31 139.0 97 66.0
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 3.7e-31 138.3 98 62.2
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.7e-31 138.3 100 65.0
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 4.9e-31 137.9 104 63.5
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 8.3e-31 137.1 98 60.2
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 8.3e-31 137.1 80 75.0
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 8.3e-31 137.1 90 63.3
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 1.8e-30 136.0 110 57.3
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.4e-30 135.6 76 77.6
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 3.1e-30 135.2 98 60.2
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 3.1e-30 135.2 98 61.2
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 4.1e-30 134.8 96 63.5
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 5.4e-30 134.4 76 77.6
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 9.2e-30 133.7 98 61.2
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 3.5e-29 131.7 98 61.2
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.5e-29 131.7 89 67.4
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 5.9e-29 131.0 130 48.5
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 5.9e-29 131.0 89 62.9
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 7.8e-29 130.6 106 55.7
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 1.0e-28 130.2 126 52.4
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 2.3e-28 129.0 103 58.3
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 2.9e-28 128.6 117 52.1
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 3.8e-28 128.3 93 60.2
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 3.8e-28 128.3 93 60.2
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 6.6e-28 127.5 76 75.0
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 1.1e-27 126.7 79 75.9
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 3.3e-27 125.2 115 50.4
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 5.6e-27 124.4 120 50.0
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 2.1e-26 122.5 75 69.3
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 6.1e-26 120.9 115 51.3
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 6.1e-26 120.9 76 69.7
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 1.4e-25 119.8 115 50.4
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 1.4e-25 119.8 115 50.4
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 4.0e-25 118.2 92 50.0
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 5.2e-25 117.9 75 66.7
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 6.8e-25 117.5 75 66.7
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 8.9e-25 117.1 74 67.6
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 9.8e-24 113.6 76 65.8
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 1.7e-23 112.8 79 68.4
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 1.7e-23 112.8 71 64.8
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 1.4e-22 109.8 101 46.5
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 1.4e-22 109.8 70 68.6
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.2e-21 106.7 76 65.8
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 1.2e-21 106.7 71 66.2
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 1.6e-21 106.3 77 61.0
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 1.6e-21 106.3 73 67.1
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 4.6e-21 104.8 61 72.1
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 8.6e-20 100.5 74 62.2
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 2.3e-17 92.4 87 46.0
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 8.9e-17 90.5 64 64.1
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 2.6e-16 89.0 114 41.2
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 7.5e-16 87.4 43 81.4
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 1.9e-11 72.8 40 80.0
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 2.8e-10 68.9 57 56.1
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 3.1e-09 65.5 37 67.6
CDE11G0759 Ceratophyllum demersum HOM05D006227 ORTHO05D129109 4.9e-07 58.2 53 50.9
RcHm_v2.0_Chr4g0411551 Rosa chinensis HOM05D000001 ORTHO05D000003 5.4e-06 54.7 61 47.5


User provided reference genes

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