Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 5.8e-56 221.1 150 100.0
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 2.6e-40 169.1 159 72.3
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 1.3e-39 166.8 155 70.3
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 3.2e-22 109.0 102 58.8
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 4.6e-21 105.1 96 59.4
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 7.9e-21 104.4 100 57.0
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 1.8e-20 103.2 98 58.2
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 8.7e-20 100.9 159 58.5
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 1.1e-19 100.5 162 60.5
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 1.1e-19 100.5 152 51.3
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 4.3e-19 98.6 156 46.8
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 6.3e-18 94.7 102 54.9
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 8.2e-18 94.4 158 42.4
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 8.2e-18 94.4 158 42.4
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 1.1e-17 94.0 160 41.9
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.1e-17 94.0 160 41.9
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 5.3e-17 91.7 163 38.7
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 2.0e-16 89.7 158 41.1
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.6e-16 89.4 168 39.3
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 7.6e-16 87.8 95 54.7
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.9e-14 83.2 98 53.1
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 9.3e-14 80.9 156 49.4
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 2.1e-13 79.7 107 48.6
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 1.8e-12 76.6 94 47.9
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 1.8e-12 76.6 157 44.6
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 3.9e-12 75.5 170 34.7
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 3.9e-12 75.5 172 33.7
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 6.7e-12 74.7 96 45.8
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 1.1e-11 73.9 110 43.6
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 1.9e-11 73.2 100 46.0
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 1.9e-11 73.2 107 43.9
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 5.7e-11 71.6 103 46.6
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.7e-10 70.1 70 57.1
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 2.8e-10 69.3 105 44.8
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 6.3e-10 68.2 99 45.5
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 6.3e-10 68.2 97 45.4
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 6.3e-10 68.2 97 45.4
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 8.2e-10 67.8 69 56.5
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 1.1e-09 67.4 105 43.8
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 1.1e-09 67.4 97 40.2
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 1.4e-09 67.0 100 44.0
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 1.8e-09 66.6 88 43.2
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 3.1e-09 65.9 101 42.6
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 5.3e-09 65.1 69 56.5
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 9.1e-09 64.3 105 39.0
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 9.1e-09 64.3 151 41.7
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 1.2e-08 63.9 99 37.4
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 1.5e-08 63.5 95 46.3
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 2.0e-08 63.2 160 51.9
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 2.0e-08 63.2 87 49.4
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 2.0e-08 63.2 87 49.4
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.6e-08 62.8 93 48.4
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 3.4e-08 62.4 94 47.9
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 3.4e-08 62.4 98 41.8
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 7.7e-08 61.2 67 56.7
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 1.0e-07 60.8 99 39.4
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 1.0e-07 60.8 100 42.0
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 1.3e-07 60.5 67 53.7
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 3.8e-07 58.9 96 39.6
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 5.0e-07 58.5 133 43.6
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 5.0e-07 58.5 97 39.2
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 6.5e-07 58.2 95 42.1
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 8.5e-07 57.8 164 38.4
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 1.4e-06 57.0 98 37.8
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 3.2e-06 55.8 100 40.0
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 4.2e-06 55.5 95 40.0
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 4.2e-06 55.5 99 39.4
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 4.2e-06 55.5 57 50.9
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 4.2e-06 55.5 57 50.9
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 5.5e-06 55.1 96 36.5
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 7.2e-06 54.7 98 36.7
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 7.2e-06 54.7 107 65.4
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 7.2e-06 54.7 95 40.0
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 7.2e-06 54.7 99 43.4


User provided reference genes

Program Settings