Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 7.1e-130 467.2 231 100.0
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 8.2e-118 427.2 232 91.4
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 5.5e-114 414.5 231 89.6
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 3.0e-104 382.1 223 83.9
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.1e-103 380.2 231 80.5
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.1e-103 380.2 231 81.0
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 2.0e-103 379.4 228 83.8
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.0e-103 379.4 231 81.8
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.6e-103 379.0 227 83.3
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 3.3e-103 378.6 231 81.0
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 7.4e-103 377.5 231 82.3
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 7.4e-103 377.5 220 82.7
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 7.4e-103 377.5 231 81.4
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.3e-102 376.7 227 82.8
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.7e-102 375.2 227 82.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 6.3e-102 374.4 253 76.7
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.8e-101 372.9 216 82.9
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 2.6e-100 369.0 229 76.4
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 7.7e-100 367.5 222 80.6
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.2e-99 365.9 226 79.2
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 2.2e-99 365.9 222 79.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 2.5e-98 362.5 227 78.9
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 3.2e-98 362.1 227 79.3
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 4.2e-98 361.7 225 75.6
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 4.2e-98 361.7 227 77.1
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 5.5e-98 361.3 222 76.6
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 9.4e-98 360.5 227 77.1
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.2e-97 360.1 222 79.7
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 2.1e-97 359.4 225 75.1
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 3.6e-97 358.6 224 76.8
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 1.0e-96 357.1 217 79.7
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.8e-96 356.3 222 76.1
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.3e-96 355.9 222 76.6
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 5.2e-96 354.8 224 75.9
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 6.7e-96 354.4 224 76.3
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 6.7e-96 354.4 222 77.5
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 8.8e-96 354.0 231 77.1
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.5e-95 353.2 227 75.3
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.6e-95 352.4 231 76.6
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.6e-95 352.4 222 74.8
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.6e-95 352.4 222 75.7
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 4.4e-95 351.7 218 78.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 4.4e-95 351.7 231 74.5
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 4.4e-95 351.7 221 79.2
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 9.7e-95 350.5 227 75.3
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.3e-94 350.1 223 74.4
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.3e-94 350.1 231 74.5
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.3e-94 350.1 231 73.6
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.3e-94 350.1 217 80.6
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.3e-94 350.1 227 75.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.7e-94 349.7 227 76.2
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.8e-94 349.0 231 74.0
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.8e-94 349.0 227 75.3
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.7e-94 348.6 231 74.0
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 3.7e-94 348.6 218 79.4
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.7e-94 348.6 217 80.2
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 4.8e-94 348.2 227 73.6
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 6.3e-94 347.8 218 74.8
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.4e-93 346.7 222 73.9
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-93 346.3 217 74.2
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.4e-93 345.9 231 72.3
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 3.1e-93 345.5 217 74.2
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.1e-93 345.5 220 77.7
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 5.3e-93 344.7 222 73.4
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 5.3e-93 344.7 221 75.6
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 7.0e-93 344.4 227 74.0
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.1e-93 344.0 228 77.2
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.2e-92 343.6 217 75.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-92 343.6 227 76.7
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.2e-92 343.6 227 74.0
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.2e-92 343.6 227 73.1
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.0e-92 342.8 214 75.2
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.0e-92 342.8 217 78.3
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 4.5e-92 341.7 228 73.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 5.9e-92 341.3 227 74.4
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 5.9e-92 341.3 227 74.4
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 5.9e-92 341.3 217 78.3
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 5.9e-92 341.3 221 74.7
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.0e-91 340.5 221 74.7
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-91 340.1 214 74.8
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.7e-91 339.7 218 77.1
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 213 77.5
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 213 77.5
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.2e-91 339.3 217 77.4
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.2e-91 339.3 217 77.4
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 2.9e-91 339.0 217 77.4
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 2.9e-91 339.0 217 77.4
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 3.8e-91 338.6 217 75.1
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.8e-91 338.6 217 76.0
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 6.5e-91 337.8 214 74.3
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 6.5e-91 337.8 217 76.5
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 8.5e-91 337.4 227 74.0
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.1e-90 337.0 227 73.6
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 1.5e-90 336.7 213 77.0
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.9e-90 336.3 213 76.5
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 2.5e-90 335.9 223 72.6
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 4.2e-90 335.1 241 71.8
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 9.4e-90 334.0 217 75.1
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.6e-89 333.2 263 67.7
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 2.1e-89 332.8 217 73.3
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.0e-88 330.5 217 72.8
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 3.0e-88 328.9 203 76.4
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 5.2e-88 328.2 205 76.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 6.8e-88 327.8 227 72.7
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.6e-87 325.9 202 74.8
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 4.4e-87 325.1 219 72.1
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 3.7e-86 322.0 204 73.5
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 4.8e-86 321.6 204 73.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 4.8e-86 321.6 217 71.9
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.4e-85 320.1 217 71.0
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.8e-85 319.7 202 78.7
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 3.1e-85 318.9 224 72.3
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 2.7e-84 315.8 213 71.4
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 3.5e-84 315.5 212 71.7
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 3.5e-84 315.5 212 71.7
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.0e-83 313.9 199 73.9
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.8e-83 312.0 201 73.6
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 3.8e-83 312.0 208 72.6
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 2.5e-82 309.3 227 70.0
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 9.5e-82 307.4 201 73.1
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.8e-80 303.1 206 71.8
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.3e-80 302.8 202 72.3
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 3.0e-80 302.4 204 71.6
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.2e-79 300.4 217 67.7
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.4e-77 293.5 203 69.0
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.2e-76 290.4 201 69.2
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 2.7e-76 289.3 186 78.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 3.5e-76 288.9 212 67.9
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 1.3e-75 287.0 212 66.5
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 6.6e-75 284.6 193 74.6
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.5e-74 283.5 216 66.2
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 9.5e-74 280.8 217 68.7
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 9.5e-74 280.8 219 63.5
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.4e-72 276.9 211 68.2
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 4.0e-72 275.4 173 76.9
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 5.2e-72 275.0 224 67.0
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 8.3e-70 267.7 216 65.3
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 7.0e-69 264.6 221 61.1
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 3.3e-66 255.8 221 58.4
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 5.6e-66 255.0 158 79.7
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 7.3e-66 254.6 205 62.9
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-65 253.8 157 76.4
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.7e-65 251.9 230 58.3
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 3.1e-64 249.2 152 80.9
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.1e-61 238.8 226 59.3
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 7.0e-61 238.0 212 59.9
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.6e-60 236.9 196 63.3
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 2.1e-60 236.5 214 56.1
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.3e-59 233.0 227 57.7
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 2.8e-57 226.1 212 57.5
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.6e-57 225.7 215 55.8
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.5e-55 220.3 212 53.8
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.5e-55 220.3 185 63.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.6e-55 219.5 151 73.5
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 5.4e-53 211.8 213 51.6
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 6.4e-46 188.3 235 46.0
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 2.8e-41 172.9 110 79.1
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 6.2e-41 171.8 181 55.2
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 4.9e-38 162.2 237 42.2
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 4.2e-37 159.1 109 68.8
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.1e-37 158.3 221 44.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 9.3e-37 157.9 102 68.6
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 3.9e-35 152.5 94 77.7
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.5e-34 150.6 219 39.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.8e-33 146.4 114 68.4
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 3.4e-31 139.4 112 68.8
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 4.6e-28 129.0 78 80.8
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.0e-27 126.3 236 33.9
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 1.9e-21 107.1 80 65.0
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.1e-18 97.8 84 63.1
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.4e-16 90.1 73 63.0
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.1e-13 81.3 195 30.8
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.3e-11 74.3 105 45.7
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.5e-07 60.8 69 52.2
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.2e-06 57.0 40 60.0


User provided reference genes

Program Settings