Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.2e-181 639.8 358 100.0
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 3.7e-125 452.2 329 78.4
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 4.2e-121 438.7 323 74.9
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.2e-120 437.2 321 73.5
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.6e-120 436.8 325 72.6
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 2.7e-120 436.0 318 75.8
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.8e-119 433.3 327 68.5
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 2.3e-119 433.0 322 74.8
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.2e-119 431.8 325 68.6
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 6.7e-119 431.4 327 68.2
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 9.1e-116 421.0 331 70.4
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 5.9e-115 418.3 326 69.9
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.5e-113 413.7 319 63.0
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 3.2e-113 412.5 312 75.0
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 2.7e-112 409.5 361 68.7
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 4.7e-112 408.7 295 74.9
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 6.1e-112 408.3 327 69.7
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.0e-111 407.5 319 69.6
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 4.0e-111 405.6 323 72.4
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 4.0e-111 405.6 334 68.3
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 5.2e-111 405.2 338 69.2
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.2e-110 404.1 351 66.1
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 2.0e-110 403.3 326 70.6
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 7.5e-110 401.4 320 60.6
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.8e-109 399.4 341 66.3
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 3.7e-109 399.1 348 65.5
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 4.8e-109 398.7 333 70.6
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 4.8e-109 398.7 319 69.6
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 1.8e-108 396.7 319 67.4
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 4.1e-108 395.6 349 65.6
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 4.1e-108 395.6 345 64.6
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 1.2e-107 394.0 345 65.5
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.6e-107 393.7 318 65.7
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 2.9e-106 389.4 320 65.9
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 3.8e-106 389.0 337 66.5
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 6.5e-106 388.3 322 70.5
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 1.1e-105 387.5 317 71.9
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 2.1e-104 383.3 327 66.1
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 2.7e-104 382.9 319 63.9
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 6.1e-104 381.7 381 56.2
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 8.8e-103 377.9 338 55.3
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 2.6e-102 376.3 320 62.2
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 3.4e-102 375.9 316 69.6
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 5.7e-102 375.2 323 58.8
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 7.5e-102 374.8 322 58.7
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.3e-101 374.0 320 56.2
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 2.2e-101 373.2 324 64.2
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 4.8e-101 372.1 320 57.5
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 4.1e-100 369.0 320 59.7
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 4.1e-100 369.0 325 62.8
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 5.9e-99 365.2 320 60.0
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 2.9e-98 362.8 322 64.0
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.8e-98 362.5 319 55.2
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 6.5e-98 361.7 321 58.9
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 7.2e-97 358.2 317 66.9
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.2e-96 357.5 346 63.3
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 2.1e-96 356.7 333 64.0
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 2.8e-96 356.3 336 65.8
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.0e-95 354.4 312 59.6
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.7e-93 347.1 317 63.7
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 2.2e-93 346.7 320 62.8
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 6.3e-93 345.1 265 68.3
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.1e-92 344.4 322 58.7
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 7.0e-92 341.7 319 62.7
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 2.9e-90 336.3 315 58.1
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 2.5e-89 333.2 345 58.6
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 2.5e-89 333.2 345 58.6
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 2.5e-89 333.2 345 58.6
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 3.3e-89 332.8 345 58.8
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 3.3e-89 332.8 323 59.8
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 5.6e-89 332.0 345 58.6
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 2.1e-88 330.1 334 60.2
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 3.6e-88 329.3 334 60.2
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 4.7e-88 328.9 345 58.6
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 4.7e-88 328.9 337 54.6
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 6.1e-88 328.6 345 57.4
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 1.8e-87 327.0 352 53.1
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 2.3e-87 326.6 334 59.6
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 1.7e-85 320.5 345 57.1
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 2.2e-85 320.1 348 58.0
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 2.9e-85 319.7 331 58.3
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 8.3e-85 318.2 318 60.4
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 8.3e-85 318.2 352 59.1
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 1.2e-83 314.3 377 53.1
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 1.6e-83 313.9 381 53.8
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 2.7e-83 313.2 314 59.2
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 4.6e-83 312.4 328 59.8
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 4.6e-83 312.4 321 53.0
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 6.0e-83 312.0 329 54.1
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 1.1e-81 307.8 365 51.0
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 5.6e-81 305.4 329 53.5
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 9.5e-81 304.7 313 52.4
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 4.7e-80 302.4 304 55.3
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 8.0e-80 301.6 311 54.7
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.4e-79 300.8 314 55.1
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.1e-79 299.7 317 48.6
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 1.2e-78 297.7 318 50.9
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.7e-77 293.9 314 47.5
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.9e-77 292.4 314 47.8
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 4.1e-76 289.3 336 56.5
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 7.3e-73 278.5 314 46.8
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 8.9e-71 271.6 340 46.5
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.4e-69 265.4 260 61.9
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 5.1e-66 255.8 313 50.8
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 1.6e-64 250.8 303 46.5
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 2.1e-64 250.4 307 44.0
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 7.6e-62 241.9 352 49.4
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.2e-59 234.6 327 46.8
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 2.3e-58 230.3 391 44.8
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 1.2e-56 224.6 319 45.8
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 1.8e-55 220.7 317 39.7
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 3.4e-54 216.5 129 73.6
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 2.2e-53 213.8 202 61.4
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 3.3e-49 199.9 129 72.1
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 5.6e-49 199.1 321 37.4
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.3e-45 188.0 228 43.4
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.2e-45 187.2 319 43.9
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 3.9e-42 176.4 154 60.4
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 3.3e-33 146.7 293 38.6
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 8.2e-32 142.1 142 45.8
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.9e-28 131.0 330 28.8
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 2.3e-26 124.0 298 28.9
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 2.5e-25 120.6 147 42.9
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.3e-25 120.2 300 28.0
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 4.1e-23 113.2 323 27.9
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.4e-22 110.2 111 48.6
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 4.6e-19 99.8 63 68.3
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 4.6e-19 99.8 223 43.0
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 9.4e-12 75.5 54 64.8
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 8.8e-10 68.9 119 35.3
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 4.1e-07 60.1 109 36.7
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 9.1e-07 58.9 109 38.5
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 2.0e-06 57.8 108 35.2
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 2.0e-06 57.8 112 37.5
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 2.0e-06 57.8 86 39.5
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 2.6e-06 57.4 111 37.8
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 3.5e-06 57.0 126 35.7
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 3.5e-06 57.0 95 41.1
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 4.5e-06 56.6 108 37.0
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 4.5e-06 56.6 109 34.9
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 5.9e-06 56.2 118 32.2
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 7.7e-06 55.8 109 36.7
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 7.7e-06 55.8 108 37.0


User provided reference genes

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