Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 9.3e-65 250.0 120 100.0
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.2e-59 233.0 116 94.0
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.5e-54 216.1 115 87.0
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 4.3e-54 214.5 115 86.1
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 5.7e-54 214.2 114 86.0
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.6e-53 212.6 120 85.8
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 2.2e-53 212.2 118 82.2
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.2e-53 212.2 120 85.8
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 3.7e-53 211.5 122 84.4
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 4.8e-53 211.1 115 85.2
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 8.2e-53 210.3 118 81.4
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.1e-52 209.9 117 82.1
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 5.3e-52 207.6 114 83.3
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 5.3e-52 207.6 118 83.1
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 6.9e-52 207.2 120 80.0
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 6.9e-52 207.2 116 81.9
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 6.9e-52 207.2 115 83.5
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 6.9e-52 207.2 113 85.0
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 6.9e-52 207.2 115 83.5
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.2e-51 206.5 118 80.5
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.2e-51 206.5 113 85.0
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-51 206.5 118 79.7
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 2.6e-51 205.3 113 83.2
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 2.6e-51 205.3 118 79.7
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 2.6e-51 205.3 112 83.9
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 3.4e-51 204.9 118 81.4
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 3.4e-51 204.9 113 83.2
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.9e-51 204.1 115 81.7
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.7e-51 203.8 116 80.2
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 7.7e-51 203.8 118 80.5
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 7.7e-51 203.8 120 80.8
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.0e-50 203.4 116 80.2
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.0e-50 203.4 116 80.2
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 1.3e-50 203.0 114 82.5
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.3e-50 203.0 116 80.2
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.7e-50 202.6 115 80.9
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.2e-50 202.2 118 80.5
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 2.2e-50 202.2 115 81.7
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.9e-50 201.8 118 79.7
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.9e-50 201.8 115 80.0
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.0e-50 201.1 116 79.3
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.0e-50 201.1 118 79.7
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.5e-50 200.3 118 78.8
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.5e-50 200.3 118 78.8
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 8.5e-50 200.3 115 82.6
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 8.5e-50 200.3 110 85.5
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 1.1e-49 199.9 113 82.3
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.1e-49 199.9 110 84.5
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.1e-49 199.9 137 71.5
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.4e-49 199.5 118 78.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.4e-49 199.5 118 77.1
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.9e-49 199.1 113 81.4
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.9e-49 199.1 118 78.0
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 3.2e-49 198.4 114 80.7
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 3.2e-49 198.4 114 80.7
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 3.2e-49 198.4 112 81.2
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 3.2e-49 198.4 110 82.7
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 5.5e-49 197.6 110 83.6
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 7.2e-49 197.2 116 79.3
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 9.4e-49 196.8 116 78.4
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.2e-48 196.4 114 81.6
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.6e-48 196.1 115 77.4
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 2.1e-48 195.7 116 78.4
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.1e-48 195.7 112 80.4
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.1e-48 195.7 116 78.4
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 6.1e-48 194.1 117 77.8
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 6.1e-48 194.1 112 79.5
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 6.1e-48 194.1 109 78.9
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 7.9e-48 193.7 115 76.5
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 7.9e-48 193.7 120 76.7
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.4e-47 193.0 115 75.7
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 3.0e-47 191.8 116 77.6
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 3.0e-47 191.8 117 75.2
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 5.1e-47 191.0 116 74.1
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 5.1e-47 191.0 117 76.9
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 5.1e-47 191.0 111 77.5
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 5.1e-47 191.0 111 77.5
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 8.8e-47 190.3 116 75.0
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 8.8e-47 190.3 116 75.0
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 8.8e-47 190.3 116 75.0
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 8.8e-47 190.3 116 75.0
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.0e-46 189.1 116 75.0
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 2.0e-46 189.1 116 75.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.0e-46 189.1 116 75.0
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.5e-46 188.7 116 74.1
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.5e-46 188.7 111 73.9
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 3.3e-46 188.3 116 74.1
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 3.3e-46 188.3 116 74.1
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 5.7e-46 187.6 116 73.3
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 5.7e-46 187.6 116 73.3
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 5.7e-46 187.6 116 73.3
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 5.7e-46 187.6 116 73.3
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 5.7e-46 187.6 116 73.3
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 5.7e-46 187.6 116 73.3
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 5.7e-46 187.6 116 74.1
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 5.7e-46 187.6 112 75.0
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 9.7e-46 186.8 111 76.6
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.3e-45 186.4 116 74.1
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 4.8e-45 184.5 115 73.9
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 6.3e-45 184.1 114 75.4
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 8.2e-45 183.7 101 84.2
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-44 182.6 116 72.4
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.8e-44 182.6 118 72.9
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.8e-44 182.6 104 80.8
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.6e-43 178.7 98 83.7
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 5.9e-43 177.6 182 52.2
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 7.7e-43 177.2 114 73.7
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.1e-41 173.3 113 70.8
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.9e-41 172.6 113 66.4
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.5e-41 172.2 113 69.9
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.2e-41 171.8 105 74.3
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 3.2e-41 171.8 107 72.0
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 7.2e-41 170.6 102 75.5
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 7.2e-41 170.6 151 57.0
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 3.6e-40 168.3 100 76.0
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.4e-39 166.4 110 68.2
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.8e-39 166.0 102 72.5
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 2.0e-38 162.5 122 65.6
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.6e-38 162.2 103 72.8
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 7.7e-35 150.6 115 64.3
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.9e-33 146.0 118 63.6
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 3.2e-33 145.2 91 75.8
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 5.5e-33 144.4 107 61.7
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.0e-30 136.0 117 56.4
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 5.7e-30 134.4 118 52.5
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 5.7e-30 134.4 85 72.9
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.6e-27 125.6 116 54.3
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.3e-26 123.2 60 88.3
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 6.5e-26 120.9 107 50.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 7.2e-25 117.5 58 87.9
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-24 115.5 103 49.5
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 3.6e-24 115.2 57 84.2
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 7.5e-22 107.5 103 48.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 9.7e-22 107.1 60 80.0
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.7e-22 107.1 85 63.5
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 3.7e-21 105.1 106 48.1
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 8.3e-21 104.0 102 52.0
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 2.7e-19 99.0 96 49.0
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 2.9e-18 95.5 64 67.2
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.1e-17 93.6 113 44.2
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.7e-16 89.0 54 79.6
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 4.7e-16 88.2 55 78.2
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.8e-13 79.0 83 50.6
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 4.1e-12 75.1 55 61.8
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 4.5e-11 71.6 58 62.1
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 3.8e-10 68.6 99 36.4
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 6.6e-10 67.8 47 61.7
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 4.7e-08 61.6 83 45.8


User provided reference genes

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