Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 2.9e-120 435.3 222 100.0
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 3.1e-82 308.9 252 69.4
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 2.9e-80 302.4 254 66.9
Sabra04G0109000 Salix brachista HOM05D000120 ORTHO05D009410 7.3e-55 218.0 222 59.9
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 2.6e-52 209.5 248 50.4
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 7.8e-49 198.0 244 50.8
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 1.8e-45 186.8 248 48.0
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 7.0e-42 174.9 235 48.1
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 2.3e-40 169.9 240 44.6
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 4.3e-39 165.6 247 43.7
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 2.1e-38 163.3 233 46.4
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 5.8e-36 155.2 239 45.6
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 5.8e-36 155.2 239 45.2
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 1.7e-35 153.7 248 41.9
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 3.7e-35 152.5 242 43.8
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 3.7e-35 152.5 243 42.0
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 4.9e-35 152.1 250 42.4
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 4.9e-35 152.1 243 43.2
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 6.4e-35 151.8 249 43.4
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 8.3e-35 151.4 241 44.0
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 1.3e-32 144.1 246 40.2
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 1.7e-32 143.7 216 45.4
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 2.3e-32 143.3 234 43.2
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 3.0e-32 142.9 241 42.3
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 1.5e-31 140.6 241 41.9
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 1.9e-31 140.2 243 41.2
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 5.6e-31 138.7 245 40.4
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 8.1e-30 134.8 228 40.8
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 1.4e-29 134.0 252 38.5
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 5.2e-29 132.1 238 39.1
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 8.9e-29 131.3 249 39.0
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 8.9e-29 131.3 244 36.1
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 1.2e-28 131.0 232 39.7
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 1.5e-28 130.6 249 40.2
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 2.6e-28 129.8 250 38.0
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 2.2e-27 126.7 249 39.4
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 2.2e-27 126.7 231 36.4
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 5.4e-26 122.1 256 37.9
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 7.1e-26 121.7 239 37.7
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 1.2e-25 120.9 229 36.2
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 3.5e-25 119.4 197 40.6
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 3.5e-25 119.4 289 33.2
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 7.8e-25 118.2 245 35.9
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 1.3e-24 117.5 234 35.5
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 3.9e-24 115.9 265 35.1
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 6.6e-24 115.2 221 37.6
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 1.1e-23 114.4 273 34.4
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 1.9e-23 113.6 366 29.0
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 2.5e-23 113.2 223 37.7
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 3.3e-23 112.8 229 33.6
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 3.3e-23 112.8 230 35.7
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 4.7e-22 109.0 237 36.3
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 1.4e-21 107.5 322 31.7
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 3.1e-21 106.3 211 39.3
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 4.0e-21 105.9 238 37.4
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 6.9e-21 105.1 231 33.8
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 2.0e-20 103.6 322 29.8
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 7.6e-20 101.7 288 31.9
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 1.3e-19 100.9 224 37.1
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 1.7e-19 100.5 254 34.6
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 3.8e-19 99.4 225 34.2
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 3.8e-19 99.4 242 36.0
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 8.4e-19 98.2 241 36.1
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 1.1e-18 97.8 238 35.3
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 1.4e-18 97.4 256 35.9
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 4.2e-18 95.9 237 34.6
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 5.4e-18 95.5 238 35.3
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 3.5e-17 92.8 232 35.8
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 4.6e-17 92.4 212 36.3
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 5.1e-16 89.0 237 34.2
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 3.3e-15 86.3 240 35.8
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 3.3e-15 86.3 199 34.7
Migut.B00178 Erythranthe guttata HOM05D000120 ORTHO05D009410 4.8e-14 82.4 215 33.5
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 8.1e-14 81.6 206 34.5
SGA_v2.0_scaffold32G13221 Striga asiatica HOM05D000120 ORTHO05D009410 1.1e-13 81.3 217 33.2
DCAR_022914 Daucus carota HOM05D000120 ORTHO05D009410 2.4e-13 80.1 239 31.4
Psat4g137840 Pisum sativum HOM05D000120 ORTHO05D009410 5.3e-13 79.0 259 31.3
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 4.9e-11 72.4 198 34.3
Zm00001eb180650 Zea mays HOM05D000120 ORTHO05D009410 4.9e-11 72.4 222 31.1
Os02g0469000 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D009410 4.2e-10 69.3 230 28.3
Aa31LG6G16270 Aethionema arabicum HOM05D011065 ORTHO05D009410 1.6e-09 67.4 247 27.9
Glyma.12G151000 Glycine max HOM05D000120 ORTHO05D009410 2.1e-09 67.0 65 53.8
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 2.1e-09 67.0 284 29.6
arahy.Tifrunner.gnm1.ann1.T5BQ73 Arachis hypogaea HOM05D000120 ORTHO05D009410 2.7e-09 66.6 78 47.4
PSO170G1560 Papaver somniferum HOM05D000120 ORTHO05D009410 7.9e-09 65.1 94 42.6
ATR0661G359 Amborella trichopoda HOM05D000120 ORTHO05D009410 1.0e-08 64.7 224 31.2
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 5.1e-08 62.4 255 26.7
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 1.9e-07 60.5 265 26.4
FAN15G0678 Fragaria x ananassa HOM05D000722 ORTHO05D000590 2.5e-07 60.1 125 36.0
AL7G10880 Arabidopsis lyrata HOM05D011065 ORTHO05D009410 7.4e-07 58.5 258 26.0
BraA08t34348Z Brassica rapa HOM05D011065 ORTHO05D009410 1.3e-06 57.8 263 25.1
BcaB03g12236 Brassica carinata HOM05D011065 ORTHO05D009410 2.8e-06 56.6 259 25.5
BcaC01g00270 Brassica carinata HOM05D011065 ORTHO05D009410 2.8e-06 56.6 260 26.2
C03p77470 Brassica napus HOM05D011065 ORTHO05D009410 2.8e-06 56.6 260 26.2
BolC3t20002H Brassica oleracea HOM05D011065 ORTHO05D009410 2.8e-06 56.6 260 26.2
BcaC01g00269 Brassica carinata HOM05D011065 ORTHO05D009410 4.8e-06 55.8 245 24.9
C03p77450 Brassica napus HOM05D011065 ORTHO05D009410 4.8e-06 55.8 245 24.9
BolC3t20000H Brassica oleracea HOM05D011065 ORTHO05D009410 4.8e-06 55.8 245 24.9


User provided reference genes

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