Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 4.4e-181 637.9 329 100.0
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 4.5e-146 521.5 336 80.4
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 2.3e-142 509.2 279 94.3
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 4.9e-140 501.5 334 78.4
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 5.9e-138 494.6 333 77.2
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 6.6e-137 491.1 317 79.8
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.1e-136 490.3 314 81.5
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.2e-135 486.9 309 81.6
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 3.6e-135 485.3 308 80.5
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 4.7e-135 485.0 292 83.2
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 6.8e-134 481.1 288 83.7
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 2.9e-132 475.7 330 77.3
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 4.9e-132 474.9 344 72.4
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.1e-131 473.8 333 74.8
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 2.4e-131 472.6 332 75.9
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 3.2e-131 472.2 283 84.5
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 3.2e-131 472.2 293 82.6
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.6e-130 469.9 335 74.0
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.6e-130 469.9 277 87.0
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.0e-129 467.2 309 79.0
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 5.0e-129 464.9 334 73.7
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.1e-128 463.8 326 73.3
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 2.5e-128 462.6 326 72.7
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 7.3e-128 461.1 280 81.1
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 6.2e-127 458.0 305 74.4
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.1e-126 457.2 306 77.1
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 2.3e-126 456.1 305 74.4
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 3.1e-126 455.7 303 76.9
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.0e-126 455.3 345 70.4
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 2.0e-125 453.0 303 76.2
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 4.4e-125 451.8 314 72.6
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.7e-124 449.9 304 72.7
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 2.9e-124 449.1 308 75.0
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 3.7e-124 448.7 320 71.6
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 4.9e-124 448.4 336 70.2
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 4.9e-124 448.4 317 72.6
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 6.4e-124 448.0 331 71.9
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.4e-123 446.8 331 71.9
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.9e-123 446.4 318 70.8
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 3.2e-123 445.7 293 76.1
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 5.4e-123 444.9 332 68.4
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 2.1e-122 443.0 303 74.9
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 2.7e-122 442.6 301 74.4
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 3.5e-122 442.2 295 75.3
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 4.6e-122 441.8 322 70.8
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.3e-121 440.3 307 75.2
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 1.7e-121 439.9 275 80.4
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 2.3e-121 439.5 344 69.5
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 3.9e-121 438.7 277 77.3
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.9e-120 436.4 330 69.4
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.9e-120 436.4 362 66.9
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 5.6e-120 434.9 293 74.4
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 7.3e-120 434.5 321 70.4
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 4.7e-119 431.8 281 77.6
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.1e-118 430.6 323 68.7
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.1e-118 430.6 289 77.9
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 2.4e-118 429.5 316 71.8
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 3.4e-117 425.6 283 77.4
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.3e-116 423.7 324 69.1
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 3.8e-116 422.2 323 69.0
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 4.9e-116 421.8 309 73.5
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 2.4e-115 419.5 280 75.0
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 2.4e-115 419.5 339 66.1
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 7.1e-115 417.9 257 79.0
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 9.2e-115 417.5 339 67.6
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.2e-114 417.2 290 71.7
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.6e-114 416.8 352 65.6
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.7e-113 413.3 349 63.3
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.9e-113 412.1 276 74.6
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 7.3e-112 407.9 280 72.1
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.2e-111 407.1 272 78.7
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.7e-108 396.7 337 65.9
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.2e-107 392.1 251 76.5
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.6e-106 390.2 277 74.4
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.1e-106 389.8 321 66.4
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 5.6e-104 381.7 287 69.3
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 1.3e-103 380.6 296 66.9
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 4.8e-103 378.6 315 68.6
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 2.4e-102 376.3 288 68.8
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 2.1e-98 363.2 277 69.7
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 5.1e-97 358.6 336 59.8
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 6.7e-97 358.2 341 58.9
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 6.7e-97 358.2 305 65.6
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.5e-96 356.3 292 65.1
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.5e-96 356.3 303 62.7
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.8e-95 352.8 292 64.7
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 8.1e-95 351.3 251 74.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.2e-92 343.2 328 60.4
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.2e-92 343.2 313 61.3
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 4.6e-90 335.5 295 64.7
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 5.1e-89 332.0 248 71.8
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 2.1e-82 310.1 197 80.7
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.3e-81 307.4 290 53.8
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 2.5e-80 303.1 310 51.9
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 2.2e-76 290.0 198 72.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.7e-74 283.1 268 53.4
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.5e-72 277.3 275 52.0
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.9e-72 276.9 270 53.0
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 7.4e-72 275.0 260 58.1
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.5e-69 267.3 163 82.8
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.0e-68 262.3 270 51.5
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.4e-65 254.2 375 45.1
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 1.8e-65 253.8 207 64.7
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.5e-61 239.2 159 73.0
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.0e-57 228.0 197 58.9
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 4.4e-48 196.1 134 73.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 1.6e-45 187.6 146 69.2
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 6.8e-41 172.2 114 76.3
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 8.8e-41 171.8 186 53.8
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 2.7e-37 160.2 185 51.4
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.5e-35 154.5 188 47.9
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 3.6e-34 149.8 225 44.0
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.3e-33 147.1 106 75.5
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 4.0e-33 146.4 253 35.2
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-32 144.8 214 43.9
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-32 144.4 212 43.4
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 9.2e-30 135.2 73 87.7
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 2.7e-29 133.7 211 43.6
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 2.9e-28 130.2 281 29.5
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 7.3e-27 125.6 137 53.3
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 7.3e-27 125.6 79 84.8
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 5.2e-25 119.4 120 55.0
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 2.6e-24 117.1 232 31.0
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 3.4e-24 116.7 69 82.6
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 1.4e-22 111.3 72 73.6
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 9.2e-22 108.6 90 58.9
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 4.6e-21 106.3 60 83.3
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 3.4e-16 90.1 61 70.5
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 4.4e-16 89.7 151 39.1
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-15 88.2 130 42.3
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.9e-14 84.3 75 58.7
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 3.2e-14 83.6 61 65.6
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 7.0e-14 82.4 78 53.8
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 3.6e-10 70.1 57 63.2
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 2.3e-09 67.4 52 61.5
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.2e-09 66.2 34 88.2
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 4.4e-08 63.2 39 71.8
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 4.1e-06 56.6 148 29.1


User provided reference genes

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