Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 0.0e+00 1405.2 731 100.0
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 0.0e+00 1170.6 731 85.4
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 5.2e-259 897.9 736 69.7
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.9e-241 839.0 717 65.6
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 2.6e-162 576.6 745 46.8
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 4.2e-144 516.2 747 43.9
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.7e-137 494.2 773 43.5
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 2.6e-133 480.3 760 43.0
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.2e-130 471.5 770 42.6
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 3.6e-127 459.9 775 39.2
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.9e-124 450.3 776 39.6
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 6.0e-122 442.6 781 38.0
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.1e-118 431.8 780 39.2
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 3.4e-117 426.8 777 38.0
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 1.7e-116 424.5 777 36.9
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.6e-111 407.9 781 38.2
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.8e-110 404.4 777 37.1
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 6.8e-110 402.5 777 37.2
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 6.8e-110 402.5 740 39.7
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.6e-106 391.3 761 37.3
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.3e-104 383.6 728 38.9
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 7.3e-104 382.5 750 38.8
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 3.4e-101 373.6 779 36.8
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 8.4e-100 369.0 782 37.1
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.7e-98 364.0 791 35.9
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 7.8e-98 362.5 803 35.2
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.1e-96 358.6 759 37.8
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 2.5e-96 357.5 765 36.1
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.2e-93 348.6 823 33.2
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.7e-92 344.7 785 36.1
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.1e-90 337.8 420 48.1
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.3e-87 328.6 770 36.0
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 3.8e-84 317.0 767 35.7
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.2e-83 313.9 770 34.7
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 9.3e-83 312.4 768 35.3
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 6.7e-81 306.2 776 35.4
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 8.7e-81 305.8 753 34.5
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.6e-79 301.6 789 33.6
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.5e-77 295.0 783 32.1
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.0e-76 292.4 781 31.6
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.5e-75 287.7 815 29.8
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 4.6e-74 283.5 766 32.6
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 5.1e-73 280.0 728 33.4
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 5.7e-72 276.6 778 31.4
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 3.7e-71 273.9 531 37.9
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 5.3e-70 270.0 778 31.5
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 5.9e-69 266.5 781 31.2
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 2.9e-68 264.2 599 35.7
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 2.5e-67 261.2 758 30.7
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 1.2e-66 258.8 803 31.0
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 2.1e-66 258.1 775 29.7
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.3e-65 255.4 754 30.2
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.9e-64 251.5 746 31.4
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 3.3e-64 250.8 485 39.4
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 5.7e-64 250.0 763 30.1
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 1.6e-63 248.4 771 32.3
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.1e-62 245.7 754 31.8
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.8e-62 245.0 786 32.1
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 4.1e-62 243.8 782 29.8
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.1e-58 231.5 655 31.6
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 6.1e-58 229.9 769 30.3
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 5.7e-56 223.4 507 36.1
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 2.8e-55 221.1 727 31.6
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 4.8e-55 220.3 809 27.9
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.1e-54 219.2 419 38.7
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.5e-53 215.3 512 32.6
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 2.6e-53 214.5 764 28.8
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.3e-52 212.2 514 34.6
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.2e-52 211.5 488 35.2
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 9.4e-51 206.1 405 39.5
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.1e-50 204.9 488 34.2
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.8e-49 201.8 768 28.5
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.8e-49 201.8 756 29.0
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 3.1e-46 191.0 748 28.6
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.0e-45 188.3 487 34.3
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 5.9e-45 186.8 428 36.4
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.9e-43 181.8 759 27.4
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 3.6e-42 177.6 817 26.3
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.6e-42 177.6 455 32.1
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.7e-41 173.3 420 32.4
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.9e-37 160.2 483 30.0
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.0e-36 159.5 256 42.2
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.9e-35 155.2 547 28.5
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.9e-35 155.2 556 28.8
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 7.2e-35 153.3 407 32.7
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.6e-34 151.0 457 31.7
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.7e-32 143.7 248 40.7
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 8.3e-31 139.8 620 27.9
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 8.3e-31 139.8 435 31.3
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.1e-30 139.4 218 39.9
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 3.5e-29 134.4 600 25.3
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 5.9e-29 133.7 568 26.4
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.3e-28 132.5 387 33.1
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 6.5e-28 130.2 412 30.1
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 9.5e-27 126.3 222 41.4
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 4.7e-26 124.0 386 30.3
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.0e-25 122.9 450 29.6
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 7.5e-24 116.7 590 27.6
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-23 115.5 379 28.2
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.2e-23 115.2 255 34.1
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.2e-23 115.2 389 29.3
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 3.7e-23 114.4 375 29.9
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 4.9e-23 114.0 373 30.3
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 6.3e-23 113.6 223 37.2
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 1.8e-22 112.1 387 31.0
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.6e-21 109.0 372 28.2
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.6e-21 109.0 372 28.2
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.0e-21 108.6 386 29.5
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 3.5e-21 107.8 370 29.7
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.8e-20 104.4 426 28.2
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.2e-18 99.4 101 51.5
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 6.1e-18 97.1 275 30.9
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 6.1e-18 97.1 275 30.9
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 6.1e-18 97.1 310 32.9
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 8.0e-18 96.7 240 32.5
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 3.0e-17 94.7 227 32.6
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 5.2e-17 94.0 272 29.0
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 2.6e-16 91.7 345 27.5
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-15 89.0 291 29.9
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.7e-15 89.0 291 29.9
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.7e-15 89.0 291 29.9
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 6.4e-15 87.0 289 29.4
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.1e-14 86.3 289 29.4
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 5.0e-12 77.4 258 27.1
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 7.3e-11 73.6 55 67.3
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.1e-10 72.0 209 33.0
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 1.4e-09 69.3 424 24.5
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 3.1e-09 68.2 156 30.1
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 4.0e-09 67.8 243 28.0
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 4.0e-09 67.8 243 28.0
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 4.9e-07 60.8 279 24.4
ATR0568G035 Amborella trichopoda HOM05D007001 ORTHO05D005587 4.1e-06 57.8 158 25.3
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 7.0e-06 57.0 228 28.5


User provided reference genes

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