Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.6e-63 246.1 147 100.0
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.1e-51 206.8 134 94.8
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.4e-51 206.5 132 96.2
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.4e-51 206.5 132 96.2
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.4e-51 206.5 132 95.5
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.4e-51 206.5 132 95.5
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.9e-51 206.1 134 94.8
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 1.9e-51 206.1 134 94.8
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.9e-51 206.1 134 94.8
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.9e-51 206.1 134 94.8
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.9e-51 206.1 134 94.8
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.5e-51 205.7 134 94.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.5e-51 205.7 134 94.0
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 3.2e-51 205.3 132 95.5
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 4.2e-51 204.9 132 95.5
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 5.5e-51 204.5 131 95.4
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 5.5e-51 204.5 131 95.4
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 5.5e-51 204.5 132 94.7
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 7.2e-51 204.1 132 94.7
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 9.4e-51 203.8 132 94.7
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 9.4e-51 203.8 132 94.7
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 9.4e-51 203.8 132 93.9
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 9.4e-51 203.8 132 94.7
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 9.4e-51 203.8 132 94.7
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 9.4e-51 203.8 132 94.7
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 9.4e-51 203.8 132 94.7
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 9.4e-51 203.8 132 94.7
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.2e-50 203.4 132 93.9
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.2e-50 203.4 132 93.9
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.2e-50 203.4 130 96.2
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 94.7
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.2e-50 203.4 132 93.9
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.6e-50 203.0 130 95.4
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.1e-50 202.6 132 93.9
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.1e-50 202.6 132 94.7
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.1e-50 202.6 132 94.7
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.1e-50 202.6 132 94.7
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.1e-50 202.6 132 94.7
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 2.7e-50 202.2 132 93.9
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 2.7e-50 202.2 132 93.2
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 4.7e-50 201.4 131 93.1
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 6.1e-50 201.1 132 93.2
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 6.1e-50 201.1 132 93.2
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 7.9e-50 200.7 132 93.9
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.4e-49 199.9 134 88.1
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.8e-49 199.5 132 91.7
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 3.0e-49 198.7 132 92.4
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.4e-48 194.9 131 87.0
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.7e-47 191.8 126 93.7
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.1e-46 190.3 132 90.2
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.1e-46 190.3 132 90.2
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.7e-44 183.0 130 86.9
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 3.8e-44 181.8 130 85.4
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 7.2e-43 177.6 186 54.8
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 2.6e-40 169.1 135 80.7
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.7e-39 166.4 129 70.5
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 2.8e-39 165.6 136 77.9
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 4.0e-33 145.2 102 94.1
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 6.7e-33 144.4 103 92.2
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.2e-32 143.7 100 94.0
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 4.4e-32 141.7 100 94.0
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.8e-31 139.0 132 62.1
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.9e-28 129.0 147 53.7
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 8.5e-28 127.5 92 70.7
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 2.7e-26 122.5 62 91.9
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.8e-25 119.8 61 90.2
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 2.8e-18 95.9 109 48.6
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 4.7e-18 95.1 47 95.7
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.5e-16 90.1 78 62.8
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 1.3e-15 87.0 45 86.7
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 8.3e-15 84.3 98 49.0
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 5.4e-14 81.6 41 87.8
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 5.4e-14 81.6 41 87.8
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.3e-12 76.3 41 87.8
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 2.6e-08 62.8 60 55.0
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 7.0e-06 54.7 109 42.2


User provided reference genes

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