Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.4e-42 176.0 96 100.0
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 4.7e-35 151.0 94 89.4
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 9.5e-28 126.7 90 77.8
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 2.1e-27 125.6 96 72.9
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 5.2e-26 120.9 96 68.8
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 9.8e-25 116.7 94 70.2
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.7e-24 115.9 96 66.7
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 2.9e-24 115.2 94 68.1
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 4.1e-23 111.3 96 66.7
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 1.2e-22 109.8 89 69.7
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.7e-22 108.6 96 63.5
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.5e-22 108.2 94 64.9
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.3e-21 106.3 98 62.2
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 3.9e-21 104.8 96 63.5
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 5.1e-21 104.4 94 66.0
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 6.6e-21 104.0 94 61.7
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 1.5e-20 102.8 98 63.3
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 2.5e-20 102.1 96 61.5
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 3.3e-20 101.7 89 67.4
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 5.6e-20 100.9 99 62.6
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 7.3e-20 100.5 94 63.8
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 9.5e-20 100.1 89 65.2
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 1.6e-19 99.4 93 63.4
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 4.7e-19 97.8 97 58.8
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 4.7e-19 97.8 89 66.3
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 6.2e-19 97.4 98 59.2
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.1e-18 96.7 96 60.4
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.1e-18 96.7 96 58.3
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.8e-18 95.9 97 62.9
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 2.3e-18 95.5 99 59.6
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 4.0e-18 94.7 103 62.1
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 5.2e-18 94.4 81 70.4
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 5.2e-18 94.4 97 57.7
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 8.9e-18 93.6 96 58.3
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 1.2e-17 93.2 99 57.6
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.2e-17 93.2 94 57.4
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 4.4e-17 91.3 96 58.3
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 4.4e-17 91.3 98 53.1
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 7.6e-17 90.5 92 59.8
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 7.6e-17 90.5 94 55.3
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 7.6e-17 90.5 94 55.3
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 7.6e-17 90.5 102 59.8
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 9.9e-17 90.1 95 58.9
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 9.9e-17 90.1 97 56.7
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 9.9e-17 90.1 94 58.5
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.2e-16 89.0 97 56.7
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 2.2e-16 89.0 97 56.7
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.2e-16 89.0 95 58.9
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.9e-16 88.6 92 58.7
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 2.9e-16 88.6 95 57.9
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 3.7e-16 88.2 89 58.4
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 4.9e-16 87.8 97 54.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 6.4e-16 87.4 97 55.7
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 1.1e-15 86.7 95 55.8
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 1.4e-15 86.3 96 55.2
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 1.4e-15 86.3 98 53.1
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 1.9e-15 85.9 95 55.8
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 2.4e-15 85.5 97 57.7
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 3.2e-15 85.1 97 52.6
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.2e-15 85.1 94 58.5
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.2e-15 85.1 94 58.5
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.2e-15 85.1 94 58.5
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 3.2e-15 85.1 97 58.8
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.1e-15 84.7 92 62.0
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 4.1e-15 84.7 89 56.2
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 5.4e-15 84.3 97 53.6
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 5.4e-15 84.3 94 60.6
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 9.2e-15 83.6 91 60.4
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.2e-14 83.2 94 56.4
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.6e-14 82.8 93 55.9
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 2.7e-14 82.0 92 54.3
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 7.8e-14 80.5 90 55.6
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 1.0e-13 80.1 89 51.7
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.0e-13 80.1 90 57.8
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 1.3e-13 79.7 96 50.0
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 1.7e-13 79.3 89 51.7
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.7e-13 79.3 92 53.3
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 1.7e-13 79.3 93 53.8
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.3e-13 79.0 94 53.2
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 3.0e-13 78.6 95 50.5
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 3.0e-13 78.6 92 51.1
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 3.0e-13 78.6 45 88.9
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 3.9e-13 78.2 90 57.8
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 3.9e-13 78.2 92 52.2
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 3.9e-13 78.2 92 52.2
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 6.6e-13 77.4 90 56.7
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 8.6e-13 77.0 92 52.2
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.1e-12 76.6 46 82.6
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 1.5e-12 76.3 87 55.2
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 1.5e-12 76.3 87 55.2
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.5e-12 76.3 92 54.3
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.9e-12 75.9 94 51.1
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.9e-12 75.9 84 51.2
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 7.3e-12 73.9 91 51.6
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 2.1e-11 72.4 79 55.7
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 6.2e-11 70.9 90 53.3
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 1.8e-10 69.3 88 52.3
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 2.4e-10 68.9 88 52.3
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 3.1e-10 68.6 85 51.8
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 1.2e-09 66.6 49 71.4
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 1.5e-09 66.2 82 52.4
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 2.0e-09 65.9 81 53.1
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 2.0e-09 65.9 89 48.3
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 7.6e-09 63.9 85 49.4
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.9e-08 61.2 92 48.9
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 8.4e-08 60.5 85 45.9
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.4e-07 59.7 75 60.0
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 1.4e-07 59.7 46 65.2
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 1.9e-07 59.3 31 80.6
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 2.4e-07 58.9 41 63.4
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 4.2e-07 58.2 94 42.6
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.2e-07 58.2 83 48.2
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.2e-07 58.2 83 48.2
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 9.3e-07 57.0 81 48.1
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 9.3e-07 57.0 90 44.4
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.1e-06 55.8 64 46.9
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 2.7e-06 55.5 78 43.6
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 4.6e-06 54.7 58 53.4
ATR0733G142 Amborella trichopoda HOM05D006766 ORTHO05D008534 7.8e-06 53.9 91 45.1


User provided reference genes

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