Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 4.2e-75 284.6 147 100.0
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 6.7e-65 250.8 147 86.4
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 4.3e-64 248.1 147 86.4
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 1.6e-63 246.1 147 86.4
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 2.2e-63 245.7 147 83.7
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 2.8e-63 245.4 147 83.7
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.1e-62 243.4 147 83.0
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 2.4e-62 242.3 147 83.0
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 3.1e-62 241.9 147 83.7
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 3.1e-62 241.9 147 83.7
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.1e-62 241.5 147 85.0
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.1e-62 241.5 147 85.0
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 6.9e-62 240.7 147 85.7
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.0e-62 240.4 147 84.4
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 2.6e-61 238.8 147 85.0
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 4.5e-61 238.0 147 83.0
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 7.6e-61 237.3 145 84.8
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 7.6e-61 237.3 145 84.8
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 7.6e-61 237.3 145 84.8
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 7.6e-61 237.3 147 83.7
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.0e-60 236.9 145 84.8
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.7e-60 236.1 145 84.1
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 2.9e-60 235.3 147 81.0
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 2.9e-60 235.3 147 83.0
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 3.8e-60 235.0 147 81.6
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 3.8e-60 235.0 147 83.7
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 5.0e-60 234.6 147 83.0
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 6.5e-60 234.2 147 81.6
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.1e-59 233.4 146 82.9
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.9e-59 232.6 147 81.0
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 3.2e-59 231.9 147 81.6
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 4.2e-59 231.5 147 81.0
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.5e-59 231.1 147 83.7
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.5e-59 231.1 147 83.7
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.5e-59 231.1 147 83.7
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 5.5e-59 231.1 147 81.0
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 5.5e-59 231.1 147 81.0
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 7.2e-59 230.7 147 83.0
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 7.2e-59 230.7 147 81.0
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 7.2e-59 230.7 145 80.7
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 7.2e-59 230.7 147 82.3
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 9.4e-59 230.3 147 82.3
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 1.2e-58 229.9 147 83.7
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 2.7e-58 228.8 147 82.3
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.7e-58 228.8 147 78.2
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.7e-58 228.8 147 78.2
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 4.6e-58 228.0 147 81.0
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.0e-57 226.9 147 82.3
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.4e-57 226.5 148 81.1
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 1.4e-57 226.5 147 83.0
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.4e-57 226.5 147 78.9
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 1.8e-57 226.1 147 80.3
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.8e-57 226.1 144 79.9
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 2.3e-57 225.7 147 78.9
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 3.9e-57 224.9 147 78.9
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 1.1e-56 223.4 147 77.6
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 2.5e-56 222.2 149 80.5
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 3.3e-56 221.9 149 77.2
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 4.3e-56 221.5 147 78.9
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 4.3e-56 221.5 145 77.9
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 5.7e-56 221.1 147 77.6
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.7e-56 221.1 148 77.7
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.7e-56 221.1 148 77.7
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 9.7e-56 220.3 155 76.1
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 9.7e-56 220.3 147 76.9
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 3.7e-55 218.4 147 78.9
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 3.7e-55 218.4 147 78.9
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 3.7e-55 218.4 147 76.9
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 4.8e-55 218.0 150 78.0
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 4.8e-55 218.0 147 78.9
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 6.3e-55 217.6 139 81.3
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 6.3e-55 217.6 147 77.6
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 8.2e-55 217.2 147 76.9
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.1e-54 216.9 147 78.2
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.8e-54 216.1 148 79.7
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 6.9e-54 214.2 147 72.1
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.3e-52 209.9 149 74.5
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.9e-52 208.8 147 74.1
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 2.9e-52 208.8 147 74.8
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 2.9e-52 208.8 147 73.5
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 5.0e-52 208.0 150 75.3
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.1e-51 206.8 147 74.1
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.4e-51 206.5 152 75.0
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 1.9e-51 206.1 138 78.3
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 3.2e-51 205.3 147 73.5
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 3.2e-51 205.3 150 72.7
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 3.2e-51 205.3 150 72.7
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 5.5e-51 204.5 147 72.8
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 5.5e-51 204.5 151 72.2
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 6.1e-50 201.1 147 73.5
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.4e-49 199.9 147 72.8
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 5.1e-49 198.0 151 70.9
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-48 196.8 147 72.1
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 2.6e-48 195.7 152 69.7
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 2.6e-48 195.7 159 69.2
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 9.7e-48 193.7 153 69.9
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 1.3e-47 193.4 155 69.0
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.3e-47 193.4 154 69.5
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 3.7e-47 191.8 155 68.4
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 3.1e-46 188.7 154 66.9
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 5.3e-46 188.0 147 68.0
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 1.2e-45 186.8 115 80.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-45 186.4 147 67.3
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.2e-42 176.8 140 69.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.2e-42 176.8 140 69.3
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.7e-42 175.6 152 63.8
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.0e-41 173.7 162 59.9
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.0e-41 173.7 149 62.4
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.3e-41 172.6 109 82.6
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 2.0e-40 169.5 147 63.9
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 2.6e-40 169.1 150 62.7
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 1.3e-39 166.8 113 80.5
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 3.7e-39 165.2 100 84.0
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.1e-38 163.7 149 63.1
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.1e-38 163.7 105 78.1
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.4e-38 162.5 140 67.9
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 5.9e-37 157.9 147 61.9
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 1.1e-35 153.7 146 61.6
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 1.4e-33 146.7 133 60.9
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 9.1e-30 134.0 90 76.7
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 2.0e-29 132.9 153 50.3
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 5.9e-29 131.3 137 52.6
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 2.9e-28 129.0 80 77.5
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 8.5e-28 127.5 104 66.3
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 8.5e-28 127.5 104 66.3
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 1.2e-26 123.6 152 48.0
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 5.7e-24 114.8 166 46.4
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 2.2e-23 112.8 78 73.1
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.0e-20 104.0 79 64.6
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 1.3e-20 103.6 145 47.6
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.8e-20 102.1 71 71.8
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.8e-20 102.1 71 71.8
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 5.0e-20 101.7 79 57.0
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.0e-20 101.7 88 62.5
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.2e-18 97.1 149 47.0
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 8.0e-18 94.4 69 60.9
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 8.0e-18 94.4 71 63.4
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.0e-17 92.4 69 63.8
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.2e-16 90.5 69 62.3
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.5e-16 90.1 69 60.9
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 8.3e-15 84.3 148 37.2
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 4.5e-13 78.6 72 55.6
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 7.8e-13 77.8 72 55.6
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 5.6e-11 71.6 122 42.6
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 7.3e-11 71.2 70 50.0
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.0e-09 67.4 72 45.8
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 2.6e-08 62.8 83 41.0
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 1.3e-07 60.5 60 56.7
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.9e-07 58.5 72 41.7
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 3.2e-06 55.8 72 41.7


User provided reference genes

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