Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 5.9e-239 830.5 426 100.0
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.2e-202 709.9 457 83.8
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 7.9e-183 644.0 334 98.2
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 2.1e-167 592.8 427 71.9
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 2.2e-161 572.8 426 69.2
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.9e-160 569.7 426 69.0
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 7.9e-159 564.3 426 69.7
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 2.5e-157 559.3 429 67.6
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 4.3e-157 558.5 428 67.5
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 9.7e-157 557.4 427 69.6
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 1.3e-156 557.0 425 69.6
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 4.1e-155 552.0 426 67.4
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 5.9e-154 548.1 428 66.1
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 1.3e-153 547.0 427 66.0
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.2e-153 546.2 430 66.3
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 6.5e-153 544.7 430 66.0
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 3.9e-150 535.4 401 68.8
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 5.7e-149 531.6 427 64.9
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 8.2e-148 527.7 395 69.6
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 2.0e-146 523.1 403 67.5
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.3e-145 520.4 391 67.8
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 3.8e-145 518.8 391 67.3
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 5.0e-145 518.5 388 67.3
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 1.1e-144 517.3 416 63.7
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 1.6e-143 513.5 401 65.6
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.3e-142 509.6 389 65.6
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 5.2e-142 508.4 420 63.8
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 6.7e-142 508.1 389 65.3
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.5e-141 506.9 386 66.3
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.4e-139 500.4 420 62.1
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.2e-138 497.3 401 62.3
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 3.8e-137 492.3 427 59.5
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 6.5e-137 491.5 387 65.1
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.5e-136 490.3 390 66.7
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 3.2e-136 489.2 404 63.1
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 3.2e-136 489.2 427 59.5
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.2e-136 489.2 429 61.3
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 7.2e-136 488.0 370 67.6
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 7.2e-136 488.0 390 64.9
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 2.6e-133 479.6 434 60.1
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 2.6e-133 479.6 426 61.3
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 3.3e-133 479.2 427 58.3
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 1.7e-132 476.9 379 66.0
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 3.7e-132 475.7 386 62.7
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 4.8e-132 475.3 391 62.4
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.8e-131 473.4 386 62.4
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.2e-130 470.7 385 62.6
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 2.7e-130 469.5 421 61.5
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.0e-129 467.6 386 61.9
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 1.7e-129 466.8 431 56.4
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 6.5e-129 464.9 448 59.8
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.5e-128 463.8 390 62.3
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 3.2e-128 462.6 391 62.9
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 5.5e-128 461.8 394 62.4
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.0e-126 457.6 357 65.0
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.4e-126 457.2 386 61.1
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 6.8e-126 454.9 389 61.2
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 8.8e-126 454.5 386 63.0
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 9.8e-125 451.1 395 58.7
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.2e-124 449.9 385 60.8
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 2.8e-124 449.5 384 58.3
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 3.7e-124 449.1 383 59.3
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 5.4e-123 445.3 381 61.2
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 7.0e-123 444.9 383 59.3
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 1.7e-121 440.3 447 54.1
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 4.2e-120 435.6 389 58.9
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.6e-119 433.7 425 56.2
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 4.7e-119 432.2 432 53.9
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 8.0e-119 431.4 395 57.5
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.2e-117 427.6 351 64.1
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 1.1e-115 421.0 431 54.5
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 1.0e-110 404.4 385 55.3
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.3e-110 403.3 386 55.7
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 5.2e-110 402.1 385 55.6
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 2.0e-109 400.2 388 54.4
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 2.6e-109 399.8 385 55.1
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 6.4e-108 395.2 395 54.9
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 8.3e-108 394.8 395 54.4
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 8.3e-108 394.8 387 56.6
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.1e-107 394.4 385 54.5
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.1e-107 394.4 385 55.3
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 7.0e-107 391.7 421 51.8
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 2.0e-106 390.2 395 54.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.6e-106 389.0 385 54.8
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 4.6e-106 389.0 323 62.8
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 6.0e-106 388.7 395 54.2
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 6.0e-106 388.7 395 54.4
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 8.6e-105 384.8 376 55.9
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.9e-104 383.6 392 55.9
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 7.3e-104 381.7 395 53.4
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 7.5e-101 371.7 337 57.6
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 9.8e-101 371.3 424 49.1
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.7e-100 369.4 337 57.6
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 2.7e-98 363.2 382 51.0
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 2.3e-97 360.1 417 49.6
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.4e-91 340.9 286 62.9
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 5.1e-89 332.4 391 49.9
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 2.8e-87 326.6 333 55.0
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 8.4e-84 315.1 305 56.7
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 7.8e-82 308.5 379 48.3
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.1e-79 300.4 311 54.3
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 4.0e-78 296.2 405 44.4
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 3.2e-75 286.6 315 49.5
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.1e-73 279.3 354 46.0
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.4e-70 271.2 427 41.2
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 2.4e-62 243.8 367 42.5
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.8e-55 220.3 250 47.2
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.1e-54 218.4 403 36.2
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 2.2e-52 210.7 336 38.4
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.9e-48 197.6 187 55.6
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.9e-42 175.6 194 50.0
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.7e-39 166.8 341 33.7
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 4.8e-39 166.4 186 52.2
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 4.8e-39 166.4 186 52.2
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.1e-38 165.2 151 55.6
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.2e-37 161.8 441 30.6
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 7.7e-37 159.1 178 52.2
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 2.1e-34 151.0 379 31.7
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 3.1e-30 137.1 351 30.2
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 7.0e-30 136.0 110 56.4
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.0e-29 134.4 73 84.9
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 2.0e-29 134.4 101 67.3
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 2.6e-29 134.0 245 35.9
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.5e-29 133.7 159 52.8
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.1e-26 124.4 104 62.5
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 5.2e-25 119.8 91 63.7
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.3e-24 117.1 123 52.8
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 4.4e-24 116.7 123 46.3
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 4.1e-22 110.2 107 59.8
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.5e-21 107.1 99 55.6
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 7.5e-16 89.4 66 68.2
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 7.5e-16 89.4 66 68.2
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 2.1e-10 71.2 68 55.9
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 4.7e-10 70.1 68 54.4
CBR_g19222 Chara braunii HOM05D003225 ORTHO05D003818 1.7e-07 61.6 353 23.2
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 2.8e-07 60.8 60 56.7
PSO063G6030 Papaver somniferum HOM05D003225 ORTHO05D003818 3.1e-06 57.4 344 23.8
Hund05507 Selenicereus undatus HOM05D003225 ORTHO05D003818 5.4e-06 56.6 323 22.0
QL04p046258 Quercus lobata HOM05D005911 ORTHO05D338131 7.0e-06 56.2 136 33.8


User provided reference genes

Program Settings