Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G148200 Populus trichocarpa HOM05D008520 ORTHO05D009890 8.0e-29 129.8 68 100.0
Sabra04G0098300 Salix brachista HOM05D012043 ORTHO05D009890 3.7e-18 94.4 63 82.5
Manes.15G145900 Manihot esculenta HOM05D008520 ORTHO05D009890 4.2e-14 80.9 75 64.0
Potri.009G109300 Populus trichocarpa HOM05D008520 ORTHO05D009890 2.1e-13 78.6 65 67.7
Phvul.011G050000 Phaseolus vulgaris HOM05D008520 ORTHO05D009890 1.0e-12 76.3 71 60.6
Cfa004952 Carpinus fangiana HOM05D008520 ORTHO05D009890 2.3e-12 75.1 72 63.9
Lj3g0002198 Lotus japonicus HOM05D008520 ORTHO05D009890 2.3e-12 75.1 74 60.8
Haze_02458 Corylus avellana HOM05D008520 ORTHO05D009890 4.0e-12 74.3 74 62.2
Manes.17G096900 Manihot esculenta HOM05D012043 ORTHO05D009890 5.2e-12 73.9 70 62.9
Glyma.11G123300 Glycine max HOM05D008520 ORTHO05D009890 1.5e-11 72.4 71 62.0
Thecc.02G029000 Theobroma cacao HOM05D008520 ORTHO05D009890 3.4e-11 71.2 73 61.6
Glyma.12G048000 Glycine max HOM05D008520 ORTHO05D009890 1.3e-10 69.3 75 52.0
Haze_02459 Corylus avellana HOM05D008520 ORTHO05D009890 3.7e-10 67.8 71 60.6
Medtr1g034290 Medicago truncatula HOM05D008520 ORTHO05D009890 8.3e-10 66.6 72 55.6
QL11p039275 Quercus lobata HOM05D008520 ORTHO05D009890 8.3e-10 66.6 69 55.1
arahy.Tifrunner.gnm1.ann1.4L7A6H Arachis hypogaea HOM05D008520 ORTHO05D009890 1.1e-09 66.2 73 56.2
arahy.Tifrunner.gnm1.ann1.H0FE8D Arachis hypogaea HOM05D008520 ORTHO05D009890 1.1e-09 66.2 73 56.2
Lalb_Chr01g0002971 Lupinus albus HOM05D008520 ORTHO05D009890 1.1e-09 66.2 67 55.2
Ciclev10029754m.g Citrus clementina HOM05D008520 ORTHO05D009890 1.4e-09 65.9 67 56.7
Ciclev10029756m.g Citrus clementina HOM05D008520 ORTHO05D009890 1.4e-09 65.9 67 56.7
Gohir.D01G172800 Gossypium hirsutum HOM05D008520 ORTHO05D009890 2.4e-09 65.1 76 59.2
Gorai.002G214400 Gossypium raimondii HOM05D008520 ORTHO05D009890 2.4e-09 65.1 76 59.2
Atru.chr5.2897 Acer truncatum HOM05D008520 ORTHO05D009890 4.1e-09 64.3 72 55.6
Cfa004950 Carpinus fangiana HOM05D008520 ORTHO05D009890 4.1e-09 64.3 72 59.7
CSS0029741 Camellia sinensis var. sinensis HOM05D008520 ORTHO05D009890 5.4e-09 63.9 80 47.5
Glyma.07G163300 Glycine max HOM05D008520 ORTHO05D009890 5.4e-09 63.9 75 57.3
Medtr4g068560 Medicago truncatula HOM05D008520 ORTHO05D009890 7.0e-09 63.5 73 50.7
Gohir.A01G181700 Gossypium hirsutum HOM05D008520 ORTHO05D009890 1.2e-08 62.8 76 57.9
Eucgr.I01222 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.6e-08 62.4 74 51.4
Eucgr.L01747 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.0e-08 62.0 74 51.4
Eucgr.I01226 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.7e-08 61.6 74 51.4
Eucgr.L01741 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.7e-08 61.6 74 51.4
Eucgr.L01746 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.7e-08 61.6 74 51.4
CiPaw.06G139100 Carya illinoinensis HOM05D012043 ORTHO05D009890 3.5e-08 61.2 73 54.8
Medtr1g034270 Medicago truncatula HOM05D008520 ORTHO05D009890 3.5e-08 61.2 68 50.0
Ca_12478_v3 Cicer arietinum L. HOM05D008520 ORTHO05D009890 4.5e-08 60.8 72 54.2
Gohir.D02G235600 Gossypium hirsutum HOM05D008520 ORTHO05D009890 5.9e-08 60.5 67 47.8
Gorai.005G263700 Gossypium raimondii HOM05D008520 ORTHO05D009890 5.9e-08 60.5 67 47.8
Prupe.8G111600 Prunus persica HOM05D008520 ORTHO05D009890 5.9e-08 60.5 82 51.2
Prupe.8G112200 Prunus persica HOM05D008520 ORTHO05D009890 5.9e-08 60.5 82 51.2
TPR.G10234 Trifolium pratense HOM05D011423 ORTHO05D009890 5.9e-08 60.5 74 48.6
Atru.chr5.2895 Acer truncatum HOM05D008520 ORTHO05D009890 7.7e-08 60.1 75 50.7
Gohir.A03G214100 Gossypium hirsutum HOM05D008520 ORTHO05D009890 1.0e-07 59.7 67 46.3
Lj2g0022497 Lotus japonicus HOM05D008520 ORTHO05D009890 1.3e-07 59.3 68 50.0
COL.COLO4_17779 Corchorus olitorius HOM05D008520 ORTHO05D009890 1.7e-07 58.9 76 52.6
TAR628G1249 Trochodendron aralioides HOM05D008520 ORTHO05D009890 1.7e-07 58.9 85 49.4
RcHm_v2.0_Chr6g0260831 Rosa chinensis HOM05D008520 ORTHO05D009890 2.3e-07 58.5 89 46.1
Eucgr.G00506 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.9e-07 58.2 77 49.4
Glyma.20G008300 Glycine max HOM05D008520 ORTHO05D009890 6.6e-07 57.0 71 57.7
AL3G47790 Arabidopsis lyrata HOM05D011423 ORTHO05D009890 1.1e-06 56.2 75 42.7
Eucgr.G01536 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.1e-06 56.2 77 48.1
C03p56720 Brassica napus HOM05D011423 ORTHO05D009890 1.5e-06 55.8 74 45.9
BolC3t17956H Brassica oleracea HOM05D011423 ORTHO05D009890 1.5e-06 55.8 74 45.9
Prupe.8G112000 Prunus persica HOM05D008520 ORTHO05D009890 1.5e-06 55.8 83 49.4
vmacro02158 Vaccinium macrocarpon HOM05D008520 ORTHO05D009890 1.5e-06 55.8 85 42.4
CARHR106280 Cardamine hirsuta HOM05D011423 ORTHO05D009890 1.9e-06 55.5 76 39.5
FAN24G0814 Fragaria x ananassa HOM05D008520 ORTHO05D009890 1.9e-06 55.5 90 43.3
FAN05G4777 Fragaria x ananassa HOM05D008520 ORTHO05D009890 2.5e-06 55.1 90 43.3
FAN15G0381 Fragaria x ananassa HOM05D008520 ORTHO05D009890 2.5e-06 55.1 90 43.3
FAN20G0555 Fragaria x ananassa HOM05D008520 ORTHO05D009890 2.5e-06 55.1 90 43.3
Phvul.003G011000 Phaseolus vulgaris HOM05D012043 ORTHO05D009890 2.5e-06 55.1 74 48.6
Prupe.8G111400 Prunus persica HOM05D008520 ORTHO05D009890 3.3e-06 54.7 81 50.6
A03p45660 Brassica napus HOM05D011423 ORTHO05D009890 4.2e-06 54.3 73 45.2
BraA03t13698Z Brassica rapa HOM05D011423 ORTHO05D009890 4.2e-06 54.3 73 45.2
Thhalv10022948m.g Eutrema salsugineum HOM05D011423 ORTHO05D009890 4.2e-06 54.3 77 42.9
Eucgr.G01538 Eucalyptus grandis HOM05D012043 ORTHO05D009890 9.5e-06 53.1 78 44.9
Sp3g29250 Schrenkiella parvula HOM05D011423 ORTHO05D009890 9.5e-06 53.1 77 42.9


User provided reference genes

Program Settings