Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.5e-228 795.8 399 100.0
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.1e-191 673.3 403 83.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 4.3e-183 644.8 403 78.7
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.5e-180 636.3 403 77.4
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.6e-180 635.6 403 77.4
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 2.9e-179 632.1 406 78.1
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 6.5e-179 630.9 406 77.1
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.2e-177 626.7 408 77.9
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.5e-177 625.2 403 76.4
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 1.3e-176 623.2 429 73.0
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.2e-172 610.1 398 76.4
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 7.6e-172 607.4 402 76.1
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.0e-171 607.1 407 75.7
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 5.0e-171 604.7 403 74.9
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 5.0e-171 604.7 387 77.3
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 8.4e-171 604.0 377 79.6
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.1e-170 603.6 402 75.6
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 4.2e-170 601.7 405 75.8
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 5.5e-170 601.3 401 76.8
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.6e-169 599.7 407 74.2
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 4.6e-169 598.2 398 75.4
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 4.6e-169 598.2 402 76.1
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.3e-168 596.7 398 74.9
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 3.0e-168 595.5 404 73.0
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 3.9e-168 595.1 403 73.7
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.5e-167 593.2 405 73.8
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.9e-167 592.8 405 73.1
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 9.7e-167 590.5 402 75.6
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.6e-166 589.7 381 75.3
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.6e-166 589.7 402 74.4
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 2.2e-166 589.3 404 72.5
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.8e-166 589.0 398 74.4
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 3.7e-166 588.6 398 74.1
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 8.2e-166 587.4 399 74.9
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.1e-165 587.0 401 72.6
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.1e-165 587.0 399 73.7
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.4e-165 586.6 398 73.4
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.4e-165 586.6 398 73.4
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.8e-165 586.3 373 76.9
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.8e-165 586.3 406 72.9
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 2.4e-165 585.9 407 72.5
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 2.4e-165 585.9 404 71.5
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 4.1e-165 585.1 398 73.1
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 6.9e-165 584.3 405 72.3
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.0e-164 582.8 348 80.5
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 2.6e-164 582.4 401 72.1
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 2.6e-164 582.4 399 73.4
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 2.6e-164 582.4 400 75.0
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 5.9e-164 581.3 399 73.7
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 1.3e-163 580.1 406 71.9
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 2.2e-163 579.3 410 72.2
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 6.5e-163 577.8 399 73.4
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.1e-162 577.0 356 78.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 1.9e-162 576.2 401 73.3
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.5e-162 575.9 400 73.0
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 2.5e-162 575.9 356 79.5
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 5.5e-162 574.7 352 79.5
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.6e-161 573.2 402 71.9
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 2.7e-161 572.4 399 72.7
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 7.9e-161 570.9 400 71.2
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 2.3e-160 569.3 402 71.4
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 3.9e-160 568.5 399 72.9
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 8.8e-160 567.4 401 72.6
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 2.0e-159 566.2 400 70.8
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 4.3e-159 565.1 418 70.1
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 5.7e-159 564.7 383 72.8
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 2.2e-158 562.8 405 71.9
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 4.8e-158 561.6 370 74.3
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 6.3e-158 561.2 403 72.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.8e-157 559.7 383 72.1
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.8e-157 559.7 400 70.8
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.0e-156 556.2 404 71.3
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 3.4e-156 555.4 402 70.9
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 4.5e-156 555.1 427 68.4
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 4.5e-156 555.1 403 70.7
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.0e-155 553.9 403 70.7
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.3e-155 553.5 356 75.3
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.8e-155 552.0 403 70.7
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 6.5e-155 551.2 361 74.5
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 8.5e-155 550.8 386 73.1
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.4e-154 550.1 328 81.4
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 7.2e-154 547.7 401 70.8
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 7.2e-154 547.7 378 73.0
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 9.4e-154 547.4 400 69.2
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 4.7e-153 545.0 407 68.8
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 4.7e-153 545.0 414 67.6
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 3.0e-152 542.3 366 73.8
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 3.0e-152 542.3 376 72.6
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 8.8e-152 540.8 401 70.1
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.0e-151 539.7 396 71.0
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 9.7e-151 537.3 371 71.7
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.1e-149 533.9 315 81.0
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.3e-149 531.6 399 67.4
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 5.3e-149 531.6 378 72.5
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 2.0e-148 529.6 383 69.5
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 8.5e-147 524.2 315 80.0
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 3.2e-146 522.3 437 64.1
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.2e-145 520.4 358 71.8
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 3.6e-145 518.8 350 72.3
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.8e-144 516.5 360 69.2
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 3.0e-144 515.8 399 66.2
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.9e-144 515.4 403 67.2
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 7.4e-143 511.1 368 67.4
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 7.4e-143 511.1 359 71.0
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 7.4e-143 511.1 348 70.4
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 9.7e-143 510.8 398 67.3
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.7e-142 510.0 353 71.7
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.8e-142 509.2 353 72.0
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 5.0e-139 498.4 350 72.3
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 5.5e-138 495.0 344 68.6
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 7.2e-138 494.6 418 64.1
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.7e-137 492.7 574 49.3
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 2.3e-136 489.6 472 58.7
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.8e-134 482.6 400 64.5
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 3.2e-130 469.2 292 78.4
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 7.2e-130 468.0 344 65.1
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 2.4e-125 453.0 346 64.2
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 9.8e-119 431.0 287 74.6
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 9.5e-114 414.5 358 62.6
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 7.4e-74 282.0 194 73.2
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 2.7e-68 263.5 375 44.3
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.0e-67 261.5 148 82.4
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 6.3e-57 225.7 171 63.2
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 7.2e-53 212.2 174 61.5
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 1.2e-52 211.5 324 43.2
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 4.6e-52 209.5 190 58.9
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 2.0e-42 177.6 112 77.7
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.9e-38 163.7 112 71.4
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 5.7e-34 149.4 81 84.0
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 6.3e-33 146.0 351 30.5
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.3e-25 121.7 83 66.3
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.1e-24 118.6 95 63.2
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.7e-17 94.7 53 77.4
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.6e-12 78.2 41 82.9
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 3.0e-11 73.9 132 37.9
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 1.2e-07 62.0 52 55.8


User provided reference genes

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