Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 3.0e-252 874.8 462 100.0
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 9.9e-232 806.6 471 91.1
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 9.6e-227 790.0 462 89.6
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 8.2e-194 680.6 468 76.9
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 4.4e-187 658.3 469 72.5
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 3.1e-185 652.1 468 73.5
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 4.2e-182 641.7 466 72.1
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 7.2e-182 641.0 465 72.0
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 4.7e-181 638.3 468 73.1
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 5.2e-180 634.8 470 72.6
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 5.2e-180 634.8 470 72.6
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 2.0e-179 632.9 466 72.3
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 1.3e-178 630.2 462 70.1
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 1.8e-177 626.3 471 69.0
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 5.4e-177 624.8 472 71.0
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 7.7e-176 620.9 459 71.7
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 6.5e-175 617.8 462 68.8
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.9e-174 616.3 466 70.0
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 2.7e-173 612.5 472 70.3
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 8.0e-173 610.9 505 65.9
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 5.2e-172 608.2 465 67.5
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 6.8e-172 607.8 472 66.5
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 8.8e-172 607.4 462 68.6
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 4.4e-171 605.1 463 68.7
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.7e-170 603.2 471 67.5
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 5.4e-169 598.2 464 67.7
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 5.4e-169 598.2 456 68.4
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 7.0e-169 597.8 460 67.8
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.2e-168 597.0 467 67.0
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.6e-168 596.7 456 68.2
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 4.5e-168 595.1 501 64.5
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 7.7e-168 594.3 456 68.0
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 7.7e-168 594.3 502 64.1
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.9e-167 592.4 463 68.7
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 6.6e-167 591.3 454 67.6
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 6.6e-167 591.3 463 68.3
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.1e-166 590.5 463 68.3
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 2.1e-165 586.3 464 65.9
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 3.6e-165 585.5 462 66.5
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 4.7e-165 585.1 467 66.8
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 8.0e-165 584.3 488 65.8
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 1.0e-164 583.9 465 66.0
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.8e-164 583.2 491 65.0
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 1.2e-163 580.5 460 66.7
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 2.6e-163 579.3 461 65.5
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.6e-163 579.3 486 63.2
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 3.4e-163 578.9 464 64.9
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 3.4e-163 578.9 452 67.7
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 7.5e-163 577.8 470 65.1
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 2.2e-162 576.2 472 65.0
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 4.9e-162 575.1 465 65.4
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 4.9e-162 575.1 467 66.2
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 6.4e-162 574.7 467 64.7
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 6.4e-162 574.7 466 65.9
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 7.0e-161 571.2 463 65.0
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 9.2e-161 570.9 464 64.2
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 4.6e-160 568.5 467 64.5
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 8.6e-159 564.3 466 63.5
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 8.6e-159 564.3 462 65.2
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 5.6e-158 561.6 467 64.7
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 1.2e-157 560.5 456 66.0
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 2.1e-157 559.7 462 64.7
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 3.6e-157 558.9 467 63.6
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 6.8e-156 554.7 466 63.9
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 1.2e-155 553.9 465 62.8
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 2.0e-155 553.1 466 63.3
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 2.6e-155 552.7 457 64.8
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 3.4e-155 552.4 468 63.0
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 5.8e-155 551.6 465 63.9
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 7.5e-155 551.2 466 62.9
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 2.9e-154 549.3 462 64.1
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 8.3e-154 547.7 462 63.0
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 5.4e-153 545.0 436 65.4
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 7.0e-153 544.7 488 62.5
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 1.6e-152 543.5 468 63.5
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.3e-151 539.7 467 64.0
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.6e-149 533.5 467 60.2
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 1.4e-148 530.4 460 60.4
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 2.3e-148 529.6 478 58.4
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 1.3e-146 523.9 427 65.3
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.9e-145 520.0 480 58.1
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 7.8e-144 514.6 415 66.7
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 9.5e-142 507.7 431 65.7
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 2.1e-141 506.5 485 55.7
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 1.7e-138 496.9 422 63.0
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 1.1e-137 494.2 373 68.1
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.4e-137 493.8 483 56.3
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 3.3e-134 482.6 322 78.0
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 4.3e-134 482.3 472 55.7
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 1.1e-132 477.6 379 67.0
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 3.8e-130 469.2 461 54.0
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 5.4e-129 465.3 472 54.7
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 3.5e-128 462.6 472 54.0
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 3.3e-126 456.1 364 67.9
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 2.2e-122 443.4 462 54.5
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 4.2e-121 439.1 332 69.9
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 1.0e-119 434.5 477 50.3
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 3.9e-119 432.6 316 71.8
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 4.2e-113 412.5 512 49.8
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.5e-107 394.0 348 61.5
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 2.6e-107 393.3 365 58.6
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 1.3e-103 380.9 332 63.0
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 1.3e-103 380.9 324 65.1
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 3.8e-90 336.3 347 55.0
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 6.5e-90 335.5 305 63.6
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 1.2e-88 331.3 267 66.3
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 9.1e-84 315.1 220 71.8
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 1.2e-80 304.7 486 38.1
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 1.1e-73 281.6 425 40.5
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 9.8e-62 241.9 342 44.4
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 3.2e-57 226.9 491 33.0
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 1.6e-48 198.0 486 33.3
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.7e-45 188.0 162 61.1
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 7.8e-43 179.1 196 53.1
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 7.3e-33 146.0 495 26.5
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 1.3e-29 135.2 372 34.1
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.9e-26 123.6 128 55.5
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 2.5e-25 120.9 141 50.4
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 2.1e-24 117.9 84 72.6
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 5.2e-23 113.2 81 67.9
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 8.9e-23 112.5 81 69.1
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 2.0e-22 111.3 82 69.5
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 3.4e-22 110.5 434 26.0
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 8.4e-21 105.9 405 25.9
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 1.7e-18 98.2 100 53.0
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 6.9e-15 86.3 100 47.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 5.6e-09 66.6 72 44.4
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 4.8e-08 63.5 72 43.1
SEGI_04453 Sequoiadendron giganteum HOM05D006261 ORTHO05D386652 5.8e-06 56.6 40 70.0


User provided reference genes

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