Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G142600 Populus trichocarpa HOM05D008297 ORTHO05D010093 2.1e-52 208.8 106 100.0
Cpa.g.sc5.36 Carica papaya HOM05D008297 ORTHO05D010093 4.9e-17 91.3 82 58.5
Gohir.A01G207000 Gossypium hirsutum HOM05D008297 ORTHO05D010093 1.1e-16 90.1 59 72.9
Gohir.D01G196400 Gossypium hirsutum HOM05D008297 ORTHO05D010093 2.4e-16 89.0 59 71.2
Gorai.002G240600 Gossypium raimondii HOM05D008297 ORTHO05D010093 2.4e-16 89.0 59 71.2
Dinv31675 Davidia involucrata HOM05D008297 ORTHO05D010093 3.2e-16 88.6 60 71.7
Manes.08G024300 Manihot esculenta HOM05D008297 ORTHO05D010093 7.1e-16 87.4 58 72.4
Manes.09G056350 Manihot esculenta HOM05D008297 ORTHO05D010093 2.7e-15 85.5 57 71.9
TWI74G0146 Tripterygium wilfordii HOM05D008297 ORTHO05D010093 2.7e-15 85.5 68 63.2
COL.COLO4_29766 Corchorus olitorius HOM05D008297 ORTHO05D010093 7.8e-15 84.0 79 60.8
MSTRG.19253 Avicennia marina HOM05D008297 ORTHO05D010093 1.0e-14 83.6 56 71.4
Prupe.7G112700 Prunus persica HOM05D008297 ORTHO05D010093 1.7e-14 82.8 65 60.0
Cfa016593 Carpinus fangiana HOM05D008297 ORTHO05D010093 2.3e-14 82.4 88 53.4
Thecc.05G087300 Theobroma cacao HOM05D008297 ORTHO05D010093 5.1e-14 81.3 83 56.6
Oeu056894.1 Olea europaea HOM05D008297 ORTHO05D010093 6.6e-14 80.9 54 64.8
Duzib093G1918 Durio zibethinus HOM05D008297 ORTHO05D010093 8.6e-14 80.5 83 54.2
QL07p039287 Quercus lobata HOM05D008297 ORTHO05D010093 8.6e-14 80.5 89 52.8
Rhsim04G0131800 Rhododendron simsii HOM05D008297 ORTHO05D010093 1.9e-13 79.3 83 50.6
Ciclev10013717m.g Citrus clementina HOM05D008297 ORTHO05D010093 4.3e-13 78.2 58 60.3
Haze_19594 Corylus avellana HOM05D008297 ORTHO05D010093 4.3e-13 78.2 89 50.6
CiPaw.10G008500 Carya illinoinensis HOM05D008297 ORTHO05D010093 5.6e-13 77.8 60 65.0
RcHm_v2.0_Chr3g0473001 Rosa chinensis HOM05D008297 ORTHO05D010093 5.6e-13 77.8 57 59.6
AUR62033499 Chenopodium quinoa HOM05D008297 ORTHO05D010093 7.3e-13 77.4 64 54.7
FAN02G0390 Fragaria x ananassa HOM05D008297 ORTHO05D010093 9.5e-13 77.0 63 50.8
CiPaw.09G012800 Carya illinoinensis HOM05D008297 ORTHO05D010093 1.2e-12 76.6 78 52.6
FAN05G0196 Fragaria x ananassa HOM05D008297 ORTHO05D010093 1.2e-12 76.6 63 50.8
FAN09G3035 Fragaria x ananassa HOM05D008297 ORTHO05D010093 1.2e-12 76.6 57 56.1
Glyma.10G071300 Glycine max HOM05D008297 ORTHO05D010093 1.2e-12 76.6 71 56.3
FvH4_6g18470 Fragaria vesca HOM05D008297 ORTHO05D010093 1.6e-12 76.3 57 56.1
FAN14G3031 Fragaria x ananassa HOM05D008297 ORTHO05D010093 1.6e-12 76.3 57 56.1
PGR004G2620 Punica granatum HOM05D008297 ORTHO05D010093 1.6e-12 76.3 60 60.0
MSTRG.5838 Avicennia marina HOM05D008297 ORTHO05D010093 2.1e-12 75.9 87 48.3
AUR62028547 Chenopodium quinoa HOM05D008297 ORTHO05D010093 3.6e-12 75.1 56 58.9
MD14G1021000 Malus domestica HOM05D008297 ORTHO05D010093 3.6e-12 75.1 54 57.4
Lj5g0010223 Lotus japonicus HOM05D008297 ORTHO05D010093 4.7e-12 74.7 56 60.7
Nn6g34936 Nelumbo nucifera HOM05D008297 ORTHO05D010093 4.7e-12 74.7 50 68.0
MD12G1023800 Malus domestica HOM05D008297 ORTHO05D010093 8.1e-12 73.9 80 46.2
Actinidia31275 Actinidia chinensis HOM05D008297 ORTHO05D010093 1.1e-11 73.6 66 59.1
FAN05G0841 Fragaria x ananassa HOM05D008297 ORTHO05D010093 1.1e-11 73.6 63 49.2
Nn5g28531 Nelumbo nucifera HOM05D008297 ORTHO05D010093 2.3e-11 72.4 64 53.1
Medtr1g060240 Medicago truncatula HOM05D008297 ORTHO05D010093 4.0e-11 71.6 54 63.0
CANSAT80G2610 Cannabis sativa HOM05D008297 ORTHO05D010093 8.9e-11 70.5 55 63.6
EL10Ac7g16932 Beta vulgaris HOM05D008297 ORTHO05D010093 1.2e-10 70.1 67 50.7
Ah.15g090940 Amaranthus hybridus HOM05D008297 ORTHO05D010093 2.6e-10 68.9 54 55.6
ECA233G2556 Erigeron canadensis HOM05D000444 ORTHO05D000489 2.6e-10 68.9 61 52.5
Phvul.007G229200 Phaseolus vulgaris HOM05D008297 ORTHO05D010093 7.6e-10 67.4 55 60.0
VMungo0720G0603 Vigna mungo HOM05D008297 ORTHO05D010093 1.7e-09 66.2 54 59.3
Lalb_Chr06g0173271 Lupinus albus HOM05D008297 ORTHO05D010093 2.2e-09 65.9 53 54.7
Migut.J01050 Erythranthe guttata HOM05D008297 ORTHO05D010093 3.8e-09 65.1 79 50.6
MBI17_g01565_MAGBIO Magnolia biondii HOM05D008297 ORTHO05D010093 3.8e-09 65.1 60 48.3
Aqoxy6G02838 Aquilegia oxysepala HOM05D008297 ORTHO05D010093 1.1e-08 63.5 70 50.0
Carub.0004s1804 Capsella rubella HOM05D012350 ORTHO05D010093 1.1e-08 63.5 58 51.7
Thhalv10017448m.g Eutrema salsugineum HOM05D012350 ORTHO05D010093 1.9e-08 62.8 60 56.7
Psat6g014040 Pisum sativum HOM05D008297 ORTHO05D010093 5.4e-08 61.2 55 58.2
TPR.G24588 Trifolium pratense HOM05D008297 ORTHO05D010093 1.2e-07 60.1 54 57.4
AL4G32400 Arabidopsis lyrata HOM05D012350 ORTHO05D010093 1.6e-07 59.7 58 50.0
TAR633G2623 Trochodendron aralioides HOM05D008297 ORTHO05D010093 1.6e-07 59.7 90 44.4
ClCG10G019060 Citrullus lanatus HOM05D008297 ORTHO05D010093 1.0e-06 57.0 75 49.3
Eucgr.A01506 Eucalyptus grandis HOM05D008297 ORTHO05D010093 1.3e-06 56.6 93 34.4
CsaV3_3G037180 Cucumis sativus L. HOM05D008297 ORTHO05D010093 2.3e-06 55.8 63 50.8
MELO3C009464.2 Cucumis melo HOM05D008297 ORTHO05D010093 3.0e-06 55.5 72 48.6
Sed0021862 Sechium edule HOM05D008297 ORTHO05D010093 3.9e-06 55.1 75 46.7
arahy.Tifrunner.gnm1.ann1.MHCF32 Arachis hypogaea HOM05D057207 ORTHO05D010093 8.6e-06 53.9 65 44.6
arahy.Tifrunner.gnm1.ann1.SCUD5X Arachis hypogaea HOM05D057207 ORTHO05D010093 8.6e-06 53.9 65 44.6


User provided reference genes

Program Settings