Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 3975.2 1987 100.0
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 3375.9 2003 87.0
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 3338.5 1993 84.6
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 3213.3 2012 81.3
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2565.0 2010 66.0
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2374.4 2038 62.0
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2362.8 2006 62.8
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2334.3 2007 60.7
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2331.2 2009 61.6
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2292.3 2009 61.4
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2272.3 1998 59.6
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2265.7 2005 59.4
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2265.3 2016 59.7
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2257.6 2023 59.3
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2256.5 2006 60.8
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2250.3 1982 61.7
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2249.9 2012 59.8
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2242.6 2000 60.9
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2241.5 2008 59.1
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2224.5 2003 59.2
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2214.9 1998 60.1
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2213.0 2011 59.1
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2196.4 2010 58.9
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2195.6 2037 57.5
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2162.9 2040 58.1
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2146.7 2033 56.3
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2138.6 2023 58.2
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2130.9 2031 57.9
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2102.8 2030 56.4
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2068.9 2020 56.9
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2018.8 2035 53.9
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 2007.3 2012 53.9
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1960.3 2005 53.3
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1958.7 2037 53.1
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1954.5 2001 53.1
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1934.5 1999 53.3
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1933.7 2002 53.0
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1933.7 2001 53.1
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1920.6 2001 52.9
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1920.2 2005 53.0
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1890.2 2010 51.8
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1880.9 2024 51.7
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1877.4 2006 51.7
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1875.1 2056 50.8
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1874.8 2005 52.3
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1874.4 2024 51.5
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1872.4 2033 52.0
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1853.6 2002 51.5
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1853.2 2006 51.5
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1842.8 2003 51.1
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1795.0 2017 51.0
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1773.4 2044 49.2
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1772.7 1933 51.3
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1750.7 2047 49.5
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1746.5 1976 50.8
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1740.3 2027 49.1
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1735.3 2006 49.1
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1731.1 2020 48.4
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1728.0 2022 48.2
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1727.6 2008 49.4
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1726.5 1726 55.5
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1721.1 2022 48.2
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1719.9 2007 48.7
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1718.0 2027 49.2
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1706.4 2011 49.1
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1706.0 2005 48.4
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1705.3 1727 55.1
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1703.0 2008 48.8
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1692.6 2024 48.8
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1689.5 2076 47.9
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1686.8 2022 48.5
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1679.5 2010 48.7
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1668.7 2037 46.5
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1667.9 2014 47.2
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1660.2 1944 48.1
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1654.4 1942 48.3
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1639.4 2015 47.8
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1635.2 2015 47.7
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1627.5 2016 47.5
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1627.1 2016 47.5
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1626.7 2016 47.5
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1592.0 2008 46.6
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1585.5 2143 44.2
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1585.1 2031 46.2
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1578.9 1952 46.8
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1576.6 2024 46.2
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1569.3 1950 46.7
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1556.2 1462 57.7
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1546.2 1995 45.4
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1541.9 1465 57.5
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1538.1 1788 48.7
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1463.0 2005 44.1
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1318.1 1199 58.5
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1313.5 2114 41.0
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1305.8 1738 43.7
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1166.4 1688 41.6
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1147.9 2018 36.1
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 4.1e-298 1029.2 2135 34.3
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 9.4e-271 938.3 1695 36.2
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.8e-266 924.1 1496 38.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 2.5e-239 833.9 2175 31.1
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 2.5e-215 754.2 681 60.9
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.0e-208 732.3 2007 31.0
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 2.5e-207 727.6 2096 30.0
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 6.7e-184 649.8 1202 36.0
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 8.8e-168 596.3 1719 29.5
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 4.0e-152 544.3 1923 27.3
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.1e-141 509.6 444 61.9
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 7.2e-138 496.9 1139 33.3
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 5.2e-136 490.7 397 61.7
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 2.1e-121 442.2 338 66.9
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 8.0e-121 440.3 443 54.4
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 5.8e-119 434.1 273 80.6
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 2.7e-116 425.2 385 56.9
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.4e-109 402.1 364 59.1
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 8.7e-99 367.1 272 68.4
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 2.8e-89 335.5 521 42.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 2.3e-75 289.3 199 71.4
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 3.3e-66 258.8 375 43.5
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 2.8e-65 255.8 251 55.0
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 4.3e-58 231.9 177 64.4
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 2.6e-55 222.6 180 62.8
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.4e-55 222.2 232 54.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 8.0e-44 184.5 506 31.0
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 1.0e-35 157.5 180 55.0
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.8e-35 156.8 314 37.6
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.2e-30 139.8 83 75.9
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-29 135.2 649 24.7
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 1.1e-24 120.9 217 34.6
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 7.2e-21 108.2 67 76.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 67 76.1
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 281 29.9
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 1.0e-19 104.4 303 23.8
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 5.2e-19 102.1 107 52.3
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 6.8e-19 101.7 66 75.8
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.2e-18 100.9 62 74.2
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.6e-18 99.8 68 67.6
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 7.5e-18 98.2 65 75.4
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 2.5e-13 83.2 57 80.7
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-13 82.0 100 43.0
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.6e-12 80.5 56 73.2
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 3.6e-12 79.3 125 36.8
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.8e-11 77.0 49 71.4
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 4.6e-07 62.4 46 63.0


User provided reference genes

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