Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 0.0e+00 1407.5 711 100.0
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 0.0e+00 1182.2 715 84.8
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 0.0e+00 1124.4 715 81.5
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.7e-246 856.3 727 63.0
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 4.6e-244 848.2 729 62.0
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.5e-242 843.2 730 61.1
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.0e-239 832.8 726 62.9
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.2e-237 825.1 723 61.4
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 6.2e-233 811.2 720 61.1
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 5.8e-231 804.7 718 60.6
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.8e-230 802.0 726 58.3
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.1e-229 800.4 726 58.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.1e-229 800.4 725 59.2
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 5.4e-229 798.1 727 58.3
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.2e-228 797.0 718 59.6
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.6e-228 796.6 737 60.0
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 7.3e-226 787.7 726 58.5
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.1e-224 782.3 725 58.2
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 9.0e-224 780.8 715 59.2
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 4.5e-223 778.5 713 57.8
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 5.8e-223 778.1 733 57.6
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 7.6e-223 777.7 723 57.8
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.9e-221 773.1 720 58.1
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 5.6e-218 761.5 719 60.2
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.3e-217 760.4 734 56.4
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.6e-217 760.0 714 59.5
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.4e-216 756.1 720 58.3
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 5.3e-216 755.0 724 57.9
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 6.9e-216 754.6 715 59.6
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.6e-215 752.7 715 59.6
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 4.5e-215 751.9 732 57.0
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 7.6e-215 751.1 724 57.3
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.6e-215 751.1 715 59.9
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 4.9e-214 748.4 719 57.7
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.1e-213 747.3 717 56.3
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.6e-212 743.4 732 56.6
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 4.6e-212 741.9 724 57.3
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 6.0e-212 741.5 714 56.6
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.9e-212 741.1 716 59.2
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.9e-210 736.5 629 63.3
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.3e-209 733.8 719 55.8
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 2.4e-208 729.6 710 54.6
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 6.9e-208 728.0 732 54.4
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.6e-207 726.1 711 54.4
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 3.4e-207 725.7 721 55.5
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.7e-206 723.4 721 55.3
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 6.5e-206 721.5 759 53.9
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 7.1e-205 718.0 720 55.0
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.7e-204 716.1 750 51.9
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 3.5e-204 715.7 719 55.2
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.6e-204 715.3 719 54.8
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.3e-203 713.8 722 54.0
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.9e-202 709.9 711 53.3
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 3.3e-202 709.1 716 55.0
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.4e-200 703.0 719 54.4
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 2.1e-196 689.9 715 52.6
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 2.7e-196 689.5 725 53.1
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 6.7e-195 684.9 724 53.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 8.8e-195 684.5 736 52.3
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 5.7e-194 681.8 727 52.7
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.7e-193 679.1 710 53.4
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 3.7e-193 679.1 673 54.5
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.3e-193 678.3 713 53.2
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 4.1e-192 675.6 740 52.3
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 5.3e-192 675.2 637 59.2
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 6.9e-192 674.9 736 51.8
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.2e-191 674.1 736 51.6
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 7.7e-191 671.4 732 51.8
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.7e-190 670.2 720 52.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.9e-190 669.5 701 54.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.2e-189 666.0 728 51.2
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 7.2e-189 664.8 753 51.5
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.6e-188 663.7 718 51.3
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 3.6e-188 662.5 719 51.7
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 7.9e-188 661.4 725 52.0
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 7.9e-188 661.4 730 50.8
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 7.9e-188 661.4 713 53.9
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 2.3e-187 659.8 734 52.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 3.0e-187 659.4 716 51.1
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 5.1e-187 658.7 718 50.8
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.5e-186 657.1 768 49.2
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 9.7e-186 654.4 720 51.0
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 9.7e-186 654.4 721 52.0
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 3.7e-185 652.5 716 50.4
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.1e-184 651.0 735 51.3
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.1e-184 649.0 716 50.1
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 4.1e-184 649.0 726 51.2
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 4.1e-184 649.0 730 50.5
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 7.0e-184 648.3 724 51.2
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 4.5e-183 645.6 718 52.1
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 7.7e-183 644.8 735 51.0
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.6e-180 637.1 742 50.1
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.0e-179 634.4 735 51.0
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.8e-179 633.6 718 49.2
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 2.0e-178 630.2 709 48.5
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 7.5e-178 628.2 638 55.2
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 5.9e-175 618.6 628 55.9
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.5e-173 614.0 745 48.6
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 4.7e-172 609.0 637 52.1
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.8e-171 607.1 601 57.2
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.3e-171 606.7 634 53.8
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.8e-168 597.0 715 49.0
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.7e-167 593.2 634 52.8
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.1e-165 587.8 721 47.0
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 5.5e-165 585.5 709 47.8
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 7.2e-165 585.1 680 48.7
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 6.8e-163 578.6 799 45.6
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.2e-162 577.8 677 47.7
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.0e-155 554.7 711 44.7
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 3.7e-153 546.2 536 56.3
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.0e-147 528.1 772 41.7
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.3e-145 521.2 711 44.3
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 7.3e-141 505.4 683 43.9
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 4.7e-140 502.7 660 44.5
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.4e-136 491.1 497 53.7
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 2.4e-128 463.8 821 38.2
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 2.1e-119 434.1 739 39.2
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.7e-118 431.0 714 38.9
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.5e-117 427.2 765 38.0
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 9.6e-117 425.2 756 37.3
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 4.2e-88 330.1 520 39.2
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.4e-83 315.1 510 38.2
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.8e-81 307.0 876 30.7
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.5e-66 257.3 469 35.6
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.6e-63 248.4 668 29.6
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.3e-59 233.4 436 34.6
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.0e-58 231.5 172 70.9
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 7.7e-58 229.6 136 83.8
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.8e-47 194.5 213 48.8
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.3e-44 185.7 229 44.5
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.7e-44 184.1 127 68.5
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.0e-38 164.5 128 60.2
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.5e-37 162.2 220 43.2
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.4e-35 155.6 98 77.6
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 7.8e-34 149.8 309 33.0
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 2.3e-33 148.3 92 77.2
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.9e-32 145.2 95 69.5
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.7e-28 132.1 130 54.6
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 6.6e-17 93.6 74 58.1
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 3.3e-16 91.3 94 47.9
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.6e-15 89.0 434 26.5
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.4e-14 85.9 123 43.1
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 2.9e-12 78.2 255 29.8
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.5e-08 65.9 177 33.9
PGR119G2014 Punica granatum HOM05D001312 ORTHO05D001832 6.2e-07 60.5 184 28.8
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 8.1e-07 60.1 151 30.5
Zm00001eb092810 Zea mays HOM05D001312 ORTHO05D001832 1.1e-06 59.7 211 29.9
Psat5g255240 Pisum sativum HOM05D001312 ORTHO05D001832 1.4e-06 59.3 226 28.8
SGA_v2.0_scaffold29G12279 Striga asiatica HOM05D001312 ORTHO05D001832 1.8e-06 58.9 186 28.5
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 2.4e-06 58.5 209 27.3
Ah.06g194370 Amaranthus hybridus HOM05D001312 ORTHO05D001832 3.1e-06 58.2 158 29.1
Nn2g13967 Nelumbo nucifera HOM05D001312 ORTHO05D001832 3.1e-06 58.2 158 30.4
ATR0820G030 Amborella trichopoda HOM05D001312 ORTHO05D001832 4.0e-06 57.8 162 31.5
SMO115G0301 Selaginella moellendorffii HOM05D001312 ORTHO05D001832 4.0e-06 57.8 172 29.7
Hund21993 Selenicereus undatus HOM05D001312 ORTHO05D001832 6.9e-06 57.0 159 28.3


User provided reference genes

Program Settings