Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 1.7e-284 981.9 464 100.0
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 2.5e-219 765.4 463 76.2
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 5.7e-211 737.6 460 72.6
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 2.8e-210 735.3 461 72.2
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 7.0e-209 730.7 463 72.6
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.0e-208 729.2 463 71.3
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 4.2e-206 721.5 560 67.1
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 9.7e-203 710.3 463 71.3
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 1.8e-201 706.1 463 70.2
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 4.5e-200 701.4 459 69.7
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 7.7e-200 700.7 461 70.3
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 1.1e-198 696.8 463 67.6
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 4.7e-197 691.4 435 72.6
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 1.4e-196 689.9 462 68.8
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 1.2e-195 686.8 463 67.8
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 4.4e-195 684.9 462 67.5
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 2.2e-194 682.6 458 67.9
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 2.8e-194 682.2 454 68.1
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 8.3e-194 680.6 462 67.1
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 5.4e-193 677.9 457 67.4
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 9.1e-193 677.2 459 66.9
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 4.5e-192 674.9 434 69.1
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.3e-191 673.3 463 66.5
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 2.9e-191 672.2 459 66.7
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 8.5e-191 670.6 495 63.0
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 3.2e-190 668.7 505 64.8
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 3.2e-190 668.7 441 69.6
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 9.4e-190 667.2 461 67.9
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.2e-189 666.8 462 67.3
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 1.6e-189 666.4 464 66.2
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 4.7e-189 664.8 464 65.9
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 3.0e-188 662.1 460 67.0
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 5.7e-187 657.9 471 65.0
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 1.3e-186 656.8 463 65.2
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 1.7e-186 656.4 460 66.1
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 2.2e-186 656.0 464 66.2
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 3.7e-186 655.2 460 66.5
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 2.7e-184 649.0 467 65.1
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 2.7e-184 649.0 478 63.0
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.0e-183 647.1 461 62.5
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 9.5e-182 640.6 457 63.7
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 1.6e-181 639.8 476 63.4
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.3e-180 636.0 473 62.8
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 5.7e-179 631.3 473 62.6
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 2.9e-178 629.0 463 62.2
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 4.9e-178 628.2 459 61.9
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 2.4e-177 625.9 350 79.4
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 3.2e-177 625.5 457 62.6
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.2e-176 623.6 469 62.9
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 4.6e-176 621.7 462 62.6
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.5e-174 615.9 462 60.2
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 7.3e-174 614.4 466 60.1
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 2.8e-173 612.5 462 59.5
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 6.8e-172 607.8 441 62.4
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 4.4e-171 605.1 411 67.4
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 5.8e-171 604.7 458 60.3
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 5.8e-171 604.7 458 60.3
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 1.3e-170 603.6 348 76.4
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 5.4e-169 598.2 464 59.5
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 9.2e-169 597.4 486 56.8
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 2.0e-168 596.3 487 56.9
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 2.7e-168 595.9 480 57.7
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.3e-167 593.6 472 59.7
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 2.1e-165 586.3 376 72.9
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 2.9e-162 575.9 419 63.2
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 4.1e-161 572.0 405 65.4
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 4.6e-160 568.5 515 54.0
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 6.0e-160 568.2 393 66.2
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.2e-157 560.5 542 51.1
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.7e-157 558.5 445 60.0
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.7e-154 550.1 582 49.5
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.2e-152 543.9 348 69.5
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 1.2e-149 533.9 464 56.0
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 2.4e-148 529.6 442 56.1
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 4.0e-148 528.9 508 52.4
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 2.0e-147 526.6 397 62.5
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 2.0e-147 526.6 378 64.6
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 1.4e-145 520.4 474 53.0
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 6.0e-144 515.0 345 70.1
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 4.0e-140 502.3 345 62.9
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 7.1e-137 491.5 392 57.9
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 1.1e-132 477.6 374 60.7
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 5.1e-127 458.8 376 58.2
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 3.7e-125 452.6 400 55.8
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 3.7e-125 452.6 461 51.6
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 1.1e-118 431.0 411 52.6
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 1.8e-111 407.1 459 46.2
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 1.9e-105 387.1 302 61.6
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 6.3e-101 372.1 424 46.9
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 5.5e-97 359.0 454 43.2
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 2.7e-96 356.7 217 71.9
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 6.1e-96 355.5 197 76.1
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 2.3e-95 353.6 252 67.5
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 7.0e-92 342.0 293 54.6
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 2.2e-90 337.0 260 58.1
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 1.9e-89 334.0 259 60.6
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 8.0e-88 328.6 495 39.4
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 2.8e-85 320.1 221 70.1
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 2.0e-83 313.9 301 53.2
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 1.8e-79 300.8 168 75.6
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.8e-71 274.2 223 61.9
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 2.8e-69 266.9 225 60.4
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 4.1e-68 263.1 166 71.1
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 3.5e-67 260.0 166 70.5
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 2.9e-66 256.9 504 31.5
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 5.4e-60 236.1 440 31.4
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 4.3e-49 199.9 252 43.3
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 9.5e-49 198.7 252 43.3
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.2e-43 181.8 199 43.7
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 7.8e-43 179.1 231 42.0
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.3e-42 178.3 300 33.0
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 1.1e-36 158.7 134 57.5
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 2.7e-35 154.1 88 76.1
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 3.0e-34 150.6 78 79.5
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 2.1e-32 144.4 87 73.6
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 4.4e-30 136.7 357 26.3
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 2.9e-29 134.0 122 54.1
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 2.9e-29 134.0 76 72.4
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 1.2e-27 128.6 105 61.0
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 2.7e-27 127.5 108 60.2
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 4.3e-25 120.2 68 75.0
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 1.6e-24 118.2 104 55.8
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 1.8e-23 114.8 82 61.0
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 3.8e-21 107.1 107 53.3
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.1e-20 105.5 219 29.2
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 4.6e-19 100.1 112 51.8
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 7.9e-19 99.4 276 27.2
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 2.6e-14 84.3 42 83.3
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 2.2e-13 81.3 107 43.9
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 7.1e-12 76.3 94 44.7
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 1.8e-10 71.6 54 53.7
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 8.7e-10 69.3 87 46.0


User provided reference genes

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