Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 1.4e-273 945.7 484 100.0
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 9.1e-236 820.1 530 82.8
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.5e-206 723.0 483 75.8
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 2.0e-206 722.6 484 73.8
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 1.8e-199 699.5 480 75.6
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 4.0e-199 698.4 481 71.9
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 4.3e-193 678.3 480 71.5
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 6.2e-192 674.5 480 69.8
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 7.5e-190 667.5 480 70.4
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 9.9e-190 667.2 483 70.4
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 2.9e-189 665.6 473 70.6
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 1.2e-187 660.2 420 76.0
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 6.0e-187 657.9 480 67.3
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 1.0e-186 657.1 467 69.2
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.5e-185 653.3 467 68.7
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 4.3e-185 651.7 452 69.7
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 4.3e-185 651.7 480 67.1
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 2.1e-184 649.4 467 68.5
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 4.0e-183 645.2 515 66.0
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 6.8e-183 644.4 418 74.4
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 8.9e-183 644.0 485 68.7
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.2e-182 643.7 489 68.3
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.2e-182 643.7 469 68.2
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 3.4e-182 642.1 474 66.2
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 3.8e-181 638.6 417 74.1
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 8.4e-181 637.5 471 65.6
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.1e-180 637.1 411 75.2
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 1.9e-180 636.3 480 65.2
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 4.1e-180 635.2 411 72.7
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 7.1e-180 634.4 466 67.8
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 1.6e-179 633.3 427 70.3
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 1.6e-179 633.3 466 66.5
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 1.6e-179 633.3 517 63.4
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 2.7e-179 632.5 412 74.5
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 2.7e-179 632.5 461 67.9
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 3.5e-179 632.1 411 74.9
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 3.0e-178 629.0 466 65.2
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.5e-177 626.7 437 71.2
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 2.5e-177 625.9 484 65.5
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.5e-177 625.9 500 63.2
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 3.3e-177 625.5 474 64.8
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 9.6e-177 624.0 430 70.7
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 9.6e-177 624.0 417 72.9
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 1.2e-176 623.6 451 71.8
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 1.2e-176 623.6 488 66.8
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.6e-176 623.2 467 67.5
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 3.6e-176 622.1 451 66.7
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 2.2e-173 612.8 413 71.9
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 2.4e-172 609.4 477 66.2
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 9.3e-172 607.4 495 63.8
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 1.6e-171 606.7 449 67.9
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 5.1e-170 601.7 482 62.9
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 8.7e-170 600.9 444 67.8
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 4.3e-169 598.6 445 67.0
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 5.6e-169 598.2 394 73.9
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.3e-169 597.8 480 63.3
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.8e-168 595.9 442 69.9
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 5.3e-167 591.7 447 68.9
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 2.0e-166 589.7 469 60.8
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 2.6e-166 589.3 446 66.4
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 7.6e-166 587.8 511 63.2
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 3.8e-165 585.5 461 64.2
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 3.2e-164 582.4 475 62.3
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 4.2e-164 582.0 455 64.8
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.7e-163 579.3 512 59.4
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.0e-162 577.4 465 62.2
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.8e-162 576.6 480 63.8
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 2.3e-162 576.2 412 66.0
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.1e-161 573.9 412 67.0
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 3.3e-161 572.4 436 66.1
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 2.1e-160 569.7 479 63.0
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 3.7e-160 568.9 448 64.3
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 4.5e-158 562.0 414 66.7
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 4.5e-158 562.0 410 66.8
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 4.5e-158 562.0 450 61.6
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 4.6e-155 552.0 416 65.6
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 2.5e-153 546.2 353 74.8
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.5e-153 546.2 512 57.2
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 4.3e-153 545.4 450 61.8
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.6e-152 543.5 481 59.3
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 4.0e-151 538.9 421 63.7
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 5.8e-150 535.0 450 64.7
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 1.3e-149 533.9 543 53.6
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 4.2e-148 528.9 352 73.3
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 1.2e-147 527.3 362 69.9
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 1.6e-147 526.9 406 64.8
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 8.2e-144 514.6 395 65.1
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 6.9e-143 511.5 395 67.1
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 1.2e-134 484.2 376 67.3
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 3.4e-134 482.6 415 55.4
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.0e-130 471.1 430 57.2
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 3.0e-130 469.5 425 54.4
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 4.4e-129 465.7 416 54.8
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 6.3e-128 461.8 324 69.8
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 8.5e-125 451.4 414 56.8
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 8.0e-123 444.9 474 53.0
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 2.2e-120 436.8 308 73.1
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 8.5e-117 424.9 455 47.7
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 4.7e-115 419.1 311 67.2
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 2.3e-106 390.2 420 48.8
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 1.6e-99 367.5 275 72.7
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 1.9e-92 344.0 286 64.0
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 2.2e-88 330.5 194 78.9
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 1.2e-83 314.7 260 56.9
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 5.4e-79 299.3 184 75.5
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.9e-69 266.5 229 62.0
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.0e-65 254.2 201 70.1
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 3.8e-64 250.0 301 48.8
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 1.7e-53 214.5 181 62.4
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 2.8e-43 180.6 257 40.5
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 4.2e-39 166.8 150 54.7
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.2e-38 165.2 127 64.6
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 1.6e-38 164.9 121 64.5
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 1.1e-36 158.7 150 60.0
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 3.7e-35 153.7 113 64.6
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.1e-31 142.1 163 55.2
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 2.7e-30 137.5 276 37.7
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.0e-29 135.6 87 66.7
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 6.7e-29 132.9 111 59.5
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.6e-27 128.3 207 38.2
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 5.9e-25 119.8 443 28.0
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 2.2e-24 117.9 103 58.3
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 2.7e-22 110.9 223 37.2
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 6.7e-21 106.3 96 56.2
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 3.2e-15 87.4 109 45.9
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.2e-15 87.4 52 80.8
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 4.2e-15 87.0 77 50.6
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 7.9e-14 82.8 478 24.3
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-13 82.4 45 84.4
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 3.0e-13 80.9 274 26.3
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 5.1e-13 80.1 54 64.8
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 9.7e-12 75.9 63 50.8
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 4.1e-10 70.5 56 51.8
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 9.1e-10 69.3 49 69.4
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.9e-08 64.3 34 85.3
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.8e-08 63.9 34 85.3


User provided reference genes

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