Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 4441.0 2225 100.0
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 4045.4 2227 91.6
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 3020.7 2240 69.8
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2954.5 2237 68.2
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2941.4 2237 68.3
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2930.2 2239 68.2
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2919.4 2241 67.5
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2919.0 2239 68.4
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2906.7 2243 67.5
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2887.8 2240 67.1
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2883.2 2242 67.5
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2865.1 2238 67.3
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2846.2 2238 67.1
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2838.5 2246 65.8
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2814.6 2244 65.3
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2811.2 2244 65.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2804.2 2235 65.3
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2771.1 2246 64.6
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2761.1 2235 64.8
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2751.1 2244 64.3
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2748.4 2233 64.4
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2742.6 2261 63.6
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2714.5 2242 63.5
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2683.7 2243 62.7
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2681.0 2243 62.6
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2664.8 2219 63.1
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2659.4 2248 63.1
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2651.3 2249 62.5
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2644.8 2249 62.4
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2630.1 2244 61.8
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2625.9 2232 62.2
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2625.5 1829 73.4
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2624.7 2237 62.1
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2615.9 2240 61.9
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2614.7 2235 62.1
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2590.8 2240 61.7
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2589.7 2236 60.9
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2580.8 2246 60.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2575.0 2254 60.7
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2572.7 2239 62.1
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2569.7 2243 60.5
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2565.4 2234 61.4
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2560.0 2248 60.7
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2557.3 2246 60.8
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2556.6 2251 60.6
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2551.9 2246 60.9
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2547.7 2250 60.8
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2540.4 2255 60.2
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2538.1 2248 60.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2536.5 2267 59.7
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2533.8 2235 60.1
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2528.4 2247 59.3
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2527.3 2258 59.7
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2523.4 2268 60.1
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2520.7 2246 59.4
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2516.5 2236 59.5
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2514.2 2241 59.5
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2498.4 2243 59.4
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2491.1 2250 58.2
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2488.8 1826 70.2
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2460.6 2252 59.5
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2448.7 2246 59.0
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2447.2 1902 66.4
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2446.4 2248 58.0
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2439.8 2247 58.8
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2438.3 1829 68.6
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2431.0 2246 58.6
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2420.2 2245 58.8
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2416.7 2272 57.5
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2406.3 2246 58.2
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2405.9 2247 58.0
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2400.2 2244 58.2
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2398.2 2248 58.2
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2398.2 2248 58.2
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2396.3 2246 58.3
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2393.2 2244 58.0
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2393.2 2244 58.0
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2386.3 2261 57.3
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2361.6 2247 57.5
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2356.3 2256 56.5
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2282.7 2247 56.5
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2265.0 1716 68.8
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2240.3 2326 53.5
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2239.9 2269 55.0
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2223.7 2072 58.5
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2142.5 2342 51.4
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2097.8 2259 51.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2075.4 2261 51.7
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2005.7 2247 51.1
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1862.4 1431 69.0
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1765.0 2389 44.0
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1619.4 1705 52.3
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1552.7 1384 60.3
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1490.3 2365 40.0
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1443.7 2387 38.9
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1325.8 2282 38.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1317.0 1119 63.5
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1311.6 2193 38.6
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1273.8 1207 57.5
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1267.3 1027 64.6
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1226.8 943 68.0
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1156.7 1064 57.9
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1110.5 1428 46.2
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 3.4e-261 906.7 1024 52.0
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 9.9e-261 905.2 803 61.3
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 5.1e-249 866.3 2178 31.3
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 7.4e-240 835.9 880 53.3
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 5.1e-217 760.0 1380 37.2
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.6e-213 747.7 726 55.8
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 1.4e-177 629.0 1021 40.7
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 8.6e-156 556.6 447 61.5
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.2e-154 552.7 2478 25.9
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 5.1e-108 397.9 378 59.5
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-78 300.4 330 50.9
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 9.4e-78 297.4 289 58.8
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.3e-76 292.7 308 52.6
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 1.1e-70 273.9 770 29.7
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.0e-63 250.8 236 55.1
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 8.6e-63 247.7 321 46.1
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-54 220.7 231 52.4
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 6.0e-48 198.4 175 63.4
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 6.6e-47 194.9 276 40.9
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 2.0e-43 183.3 140 67.1
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 5.6e-38 165.2 221 43.9
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.7e-34 153.7 112 66.1
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 3.8e-34 152.5 93 80.6
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.9e-33 150.2 480 27.5
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 6.9e-28 131.7 140 50.7
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 3.4e-27 129.4 111 63.1
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 2.2e-26 126.7 288 32.6
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 2.9e-26 126.3 108 61.1
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.3e-15 90.9 108 42.6
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 3.8e-10 72.8 470 23.8


User provided reference genes

Program Settings