Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.7e-56 222.2 154 100.0
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 3.1e-36 155.6 147 57.1
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 4.0e-36 155.2 147 57.8
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 2.3e-23 112.8 140 46.4
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 8.7e-23 110.9 148 45.3
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 8.7e-23 110.9 66 77.3
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.3e-21 107.1 143 43.4
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 1.3e-21 107.1 71 73.2
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 1.6e-21 106.7 144 43.8
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 2.8e-21 105.9 148 42.6
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 3.6e-21 105.5 61 80.3
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 6.2e-21 104.8 69 69.6
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.4e-20 103.6 74 66.2
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.4e-20 103.6 74 66.2
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.4e-20 103.6 74 66.2
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 1.8e-20 103.2 71 67.6
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 1.8e-20 103.2 63 77.8
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 2.4e-20 102.8 71 69.0
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 2.4e-20 102.8 66 69.7
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 3.1e-20 102.4 69 68.1
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 4.0e-20 102.1 69 71.0
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 1.2e-19 100.5 130 44.6
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 1.5e-19 100.1 67 68.7
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 5.8e-19 98.2 73 65.8
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 1.7e-18 96.7 71 67.6
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 2.9e-18 95.9 64 70.3
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 3.8e-18 95.5 71 67.6
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 8.4e-18 94.4 80 61.2
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.9e-17 93.2 68 61.8
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 4.2e-17 92.0 67 64.2
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 5.4e-17 91.7 71 63.4
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 7.1e-17 91.3 78 57.7
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 9.3e-17 90.9 57 71.9
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 9.3e-17 90.9 68 60.3
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.2e-16 90.5 68 63.2
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 1.6e-16 90.1 69 62.3
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 1.6e-16 90.1 57 71.9
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.6e-16 90.1 152 38.2
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 1.6e-16 90.1 75 60.0
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.1e-16 89.7 68 63.2
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 2.1e-16 89.7 72 63.9
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 2.7e-16 89.4 64 65.6
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 2.7e-16 89.4 63 65.1
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 2.7e-16 89.4 74 60.8
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 4.6e-16 88.6 57 70.2
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.6e-16 88.6 57 70.2
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.6e-16 88.6 57 70.2
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 6.0e-16 88.2 62 62.9
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.0e-15 87.4 67 61.2
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 1.3e-15 87.0 72 58.3
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.3e-15 87.0 67 61.2
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.3e-15 87.0 67 61.2
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.3e-15 87.0 57 70.2
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 1.7e-15 86.7 72 59.7
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 2.3e-15 86.3 67 62.7
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.3e-15 86.3 65 66.2
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 3.9e-15 85.5 67 62.7
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 3.9e-15 85.5 63 68.3
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 5.1e-15 85.1 58 63.8
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 8.7e-15 84.3 70 55.7
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 8.7e-15 84.3 65 60.0
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 1.5e-14 83.6 68 60.3
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.5e-14 83.6 68 58.8
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.9e-14 83.2 68 61.8
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.9e-14 83.2 148 38.5
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 2.5e-14 82.8 70 55.7
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 2.5e-14 82.8 61 62.3
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 3.3e-14 82.4 70 55.7
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 4.3e-14 82.0 69 55.1
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 5.6e-14 81.6 70 55.7
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 9.6e-14 80.9 70 57.1
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 1.6e-13 80.1 70 52.9
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 2.1e-13 79.7 55 65.5
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 2.1e-13 79.7 64 60.9
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 6.2e-13 78.2 60 61.7
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 6.2e-13 78.2 64 67.2
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 6.2e-13 78.2 51 70.6
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 4.0e-12 75.5 62 56.5
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 5.3e-12 75.1 55 63.6
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 9.0e-12 74.3 61 59.0
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 9.0e-12 74.3 61 55.7
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 9.0e-12 74.3 61 55.7
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.5e-11 73.6 69 52.2
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 2.6e-11 72.8 59 59.3
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 2.6e-11 72.8 57 63.2
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 2.6e-11 72.8 59 59.3
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 2.6e-11 72.8 59 59.3
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 2.6e-11 72.8 57 63.2
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 3.4e-11 72.4 57 61.4
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 4.5e-11 72.0 55 60.0
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 5.8e-11 71.6 66 50.0
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 2.2e-10 69.7 51 62.7
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 3.8e-10 68.9 47 66.0
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 3.8e-10 68.9 69 52.2
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 6.4e-10 68.2 53 58.5
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 8.4e-10 67.8 47 68.1
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 8.4e-10 67.8 63 52.4
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 1.1e-09 67.4 69 50.7
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 1.9e-09 66.6 50 60.0
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.9e-09 66.6 73 49.3
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 5.5e-09 65.1 68 51.5
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 7.1e-09 64.7 56 58.9
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 7.1e-09 64.7 79 46.8
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.2e-08 63.9 55 56.4
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 1.2e-08 63.9 55 56.4
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 1.3e-07 60.5 62 50.0
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 3.9e-07 58.9 48 60.4
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 6.7e-07 58.2 43 60.5
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.1e-06 57.4 43 62.8
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 1.1e-06 57.4 59 52.5


User provided reference genes

Program Settings