Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1526.1 798 100.0
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1350.1 802 89.3
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1260.0 802 82.0
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1258.4 897 76.8
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1240.7 800 81.6
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1221.5 801 79.9
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1205.7 798 79.8
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1200.7 794 79.3
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1198.3 809 77.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1195.6 800 79.4
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1187.2 803 78.0
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1179.5 803 77.2
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1178.3 800 78.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1177.9 803 77.3
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1176.0 815 76.8
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1175.6 796 76.8
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1172.5 817 77.0
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1168.3 783 78.8
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1167.5 804 76.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1167.1 810 76.5
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1161.4 812 77.0
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1155.6 807 75.6
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1154.0 806 75.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1151.3 799 76.6
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 797 76.2
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1140.9 807 75.0
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1140.6 848 72.5
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1134.8 801 75.8
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1134.8 799 75.7
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1129.0 814 74.3
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1129.0 797 74.8
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 799 75.2
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 795 75.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1126.3 760 78.8
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 796 74.5
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 804 74.4
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1123.2 808 74.5
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1122.5 813 74.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1121.7 871 70.8
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1120.5 795 74.8
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1119.8 851 71.3
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1119.4 796 74.6
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1119.0 797 74.9
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1118.2 803 73.5
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 800 74.2
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1114.4 811 73.1
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 800 73.9
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 813 73.2
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1107.4 801 73.3
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1107.4 798 74.2
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1107.0 800 73.8
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1105.9 797 73.0
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1104.7 803 73.5
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1102.0 825 71.6
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1098.6 803 72.4
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1097.0 788 73.4
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 808 72.3
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 788 73.5
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1092.0 791 73.3
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1088.2 789 72.4
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 809 72.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 794 71.8
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1081.6 792 72.7
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 791 72.9
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1075.5 800 71.6
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 798 71.2
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 5.5e-312 1074.7 808 69.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 786 72.5
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 786 72.5
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 799 71.1
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.6e-311 1072.4 795 71.2
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.6e-311 1072.4 809 69.3
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 8.2e-311 1070.1 803 70.5
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.9e-310 1068.9 794 70.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 2.4e-310 1068.5 796 71.7
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 2.4e-310 1068.5 763 74.7
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.2e-309 1066.2 794 73.9
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.6e-309 1065.8 797 70.9
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-309 1065.1 787 72.9
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.5e-307 1058.5 789 70.7
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 9.5e-307 1056.6 789 71.5
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 9.5e-307 1056.6 789 71.5
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-306 1056.2 789 71.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.1e-305 1053.1 800 70.5
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 5.8e-304 1047.3 804 70.3
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.1e-301 1038.9 795 68.9
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.9e-299 1032.3 648 82.7
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.6e-298 1029.2 793 69.4
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.1e-297 1025.0 648 82.7
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.8e-296 1020.8 648 82.3
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.4e-294 1016.1 802 70.4
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.7e-292 1009.2 781 68.6
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 3.0e-292 1008.4 803 66.9
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.6e-290 1001.5 802 67.8
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 6.0e-285 984.2 795 67.5
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-282 975.7 788 67.8
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.9e-279 965.3 809 66.0
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.9e-279 965.3 842 63.2
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 6.4e-279 964.1 786 66.8
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.9e-278 962.6 794 64.9
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 7.1e-278 960.7 781 66.5
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 3.5e-277 958.4 786 67.2
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 7.9e-277 957.2 809 63.5
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 2.2e-271 939.1 787 65.2
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 3.8e-271 938.3 780 66.0
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 7.9e-261 904.0 788 64.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.9e-255 885.6 818 59.7
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 2.5e-254 882.5 825 59.6
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.4e-251 870.9 792 58.6
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.2e-248 863.6 720 67.6
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.6e-248 862.4 796 60.1
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-221 773.9 639 66.7
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.3e-218 763.8 649 64.3
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.0e-204 715.7 808 51.0
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.6e-200 703.7 481 77.3
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.1e-184 650.2 854 45.2
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.1e-184 650.2 854 45.2
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 6.8e-180 635.2 876 44.3
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.1e-173 611.7 848 43.6
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 5.6e-166 589.0 532 62.4
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.3e-165 587.8 622 55.1
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 3.6e-165 586.3 834 43.3
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 7.6e-163 578.6 460 64.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.9e-162 575.9 658 48.9
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 2.3e-159 567.0 593 54.1
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.2e-155 554.7 435 65.5
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.3e-138 498.0 404 67.8
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 9.4e-105 385.6 606 43.7
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 5.4e-100 369.8 618 42.1
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.4e-79 302.0 699 35.5
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.4e-79 302.0 214 75.2
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-75 287.7 207 72.9
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.9e-73 281.6 197 74.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.3e-73 280.8 197 74.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.3e-73 280.8 197 74.1
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 8.1e-72 276.2 766 30.9
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 5.8e-70 270.0 211 66.8
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-62 244.2 478 38.7
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.2e-60 237.3 237 57.8
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 1.2e-51 209.1 118 79.7
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.9e-50 204.1 131 82.4
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.4e-47 194.9 573 32.3
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 6.9e-47 193.4 806 27.4
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.8e-40 171.4 87 85.1
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.8e-40 171.4 87 85.1
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.6e-38 164.9 361 33.0
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.6e-38 164.9 245 44.5
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 7.6e-38 163.3 92 80.4
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.6e-33 146.4 130 59.2
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 3.7e-32 144.4 166 48.2
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 9.7e-25 119.8 89 61.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 4.8e-24 117.5 75 84.0
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 2.9e-21 108.2 71 70.4
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 1.9e-20 105.5 74 67.6
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-19 102.1 113 46.0
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.7e-19 101.7 123 51.2
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.8e-18 99.0 57 89.5
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.1e-18 97.4 108 49.1
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-17 96.3 85 56.5
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 2.6e-14 85.1 114 49.1
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 5.9e-14 84.0 59 66.1
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 3.6e-11 74.7 52 80.8
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 6.1e-11 73.9 76 51.3
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 6.7e-10 70.5 77 49.4
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 8.8e-10 70.1 136 36.8
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 8.8e-10 70.1 52 76.9
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 3.3e-09 68.2 51 76.5
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 7.4e-09 67.0 76 53.9
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 2.2e-08 65.5 65 61.5
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.8e-08 65.1 248 29.0
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 2.0e-06 58.9 122 41.0


User provided reference genes

Program Settings